Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1063

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1062 and GFF1063 overlap by 4 nucleotidesGFF1063 and GFF1064 are separated by 804 nucleotides GFF1062 - Sensory box sensor histidine kinase/response regulator, at 803,907 to 806,171 GFF1062 GFF1063 - hypothetical protein, at 806,168 to 806,518 GFF1063 GFF1064 - Mobile element protein, at 807,323 to 808,297 GFF1064 Position (kb) 806 807Strain fitness (log2 ratio) -2 -1 0 1at 805.336 kb on + strand, within GFF1062at 805.336 kb on + strand, within GFF1062at 805.336 kb on + strand, within GFF1062at 805.336 kb on + strand, within GFF1062at 805.336 kb on + strand, within GFF1062at 805.336 kb on + strand, within GFF1062at 805.337 kb on - strand, within GFF1062at 805.337 kb on - strand, within GFF1062at 805.364 kb on + strand, within GFF1062at 805.519 kb on + strand, within GFF1062at 805.520 kb on - strand, within GFF1062at 805.582 kb on - strand, within GFF1062at 805.648 kb on - strand, within GFF1062at 805.648 kb on - strand, within GFF1062at 805.648 kb on - strand, within GFF1062at 805.682 kb on + strand, within GFF1062at 805.682 kb on + strand, within GFF1062at 805.682 kb on + strand, within GFF1062at 805.683 kb on - strand, within GFF1062at 805.987 kb on + strandat 805.988 kb on - strandat 805.988 kb on - strandat 805.999 kb on + strandat 805.999 kb on + strandat 805.999 kb on + strandat 806.000 kb on - strandat 806.000 kb on - strandat 806.174 kb on + strandat 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.212 kb on - strand, within GFF1063at 806.212 kb on - strand, within GFF1063at 806.212 kb on - strand, within GFF1063at 806.212 kb on - strand, within GFF1063at 806.212 kb on - strand, within GFF1063at 806.215 kb on - strand, within GFF1063at 806.215 kb on - strand, within GFF1063at 806.215 kb on - strand, within GFF1063at 806.239 kb on + strand, within GFF1063at 806.239 kb on + strand, within GFF1063at 806.239 kb on + strand, within GFF1063at 806.239 kb on + strand, within GFF1063at 806.240 kb on - strand, within GFF1063at 806.240 kb on - strand, within GFF1063at 806.240 kb on - strand, within GFF1063at 806.253 kb on + strand, within GFF1063at 806.253 kb on + strand, within GFF1063at 806.253 kb on + strand, within GFF1063at 806.253 kb on + strand, within GFF1063at 806.253 kb on + strand, within GFF1063at 806.253 kb on + strand, within GFF1063at 806.254 kb on - strand, within GFF1063at 806.254 kb on - strand, within GFF1063at 806.364 kb on + strand, within GFF1063at 806.364 kb on + strand, within GFF1063at 806.364 kb on + strand, within GFF1063at 806.364 kb on + strand, within GFF1063at 806.364 kb on + strand, within GFF1063at 806.364 kb on + strand, within GFF1063at 806.365 kb on - strand, within GFF1063at 806.365 kb on - strand, within GFF1063at 806.410 kb on + strand, within GFF1063at 806.410 kb on + strand, within GFF1063at 806.410 kb on + strand, within GFF1063at 806.410 kb on + strand, within GFF1063at 806.411 kb on - strand, within GFF1063at 806.411 kb on - strand, within GFF1063at 806.411 kb on - strand, within GFF1063at 806.411 kb on - strand, within GFF1063at 806.411 kb on - strand, within GFF1063at 806.684 kb on + strandat 806.684 kb on + strandat 806.685 kb on - strandat 806.714 kb on + strandat 806.714 kb on + strandat 806.715 kb on - strandat 806.715 kb on - strandat 806.827 kb on - strandat 806.912 kb on + strandat 806.912 kb on + strandat 806.979 kb on + strandat 806.980 kb on - strandat 807.054 kb on + strandat 807.055 kb on - strandat 807.056 kb on + strandat 807.057 kb on - strandat 807.068 kb on + strandat 807.069 kb on - strandat 807.107 kb on + strandat 807.107 kb on + strandat 807.108 kb on - strandat 807.184 kb on + strandat 807.184 kb on + strandat 807.184 kb on + strandat 807.185 kb on - strandat 807.185 kb on - strandat 807.231 kb on + strandat 807.232 kb on - strandat 807.232 kb on - strandat 807.491 kb on - strand, within GFF1064

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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805,336 + GFF1062 0.63 -0.6
805,336 + GFF1062 0.63 -0.0
805,336 + GFF1062 0.63 +0.0
805,336 + GFF1062 0.63 +0.1
805,336 + GFF1062 0.63 +0.8
805,336 + GFF1062 0.63 -0.3
805,337 - GFF1062 0.63 -0.4
805,337 - GFF1062 0.63 -1.0
805,364 + GFF1062 0.64 +0.3
805,519 + GFF1062 0.71 +1.0
805,520 - GFF1062 0.71 -0.7
805,582 - GFF1062 0.74 +0.2
805,648 - GFF1062 0.77 +0.2
805,648 - GFF1062 0.77 -1.2
805,648 - GFF1062 0.77 +0.1
805,682 + GFF1062 0.78 +0.5
805,682 + GFF1062 0.78 +1.5
805,682 + GFF1062 0.78 +0.2
805,683 - GFF1062 0.78 -0.6
805,987 + -0.4
805,988 - -1.4
805,988 - -1.1
805,999 + +0.3
805,999 + -0.4
805,999 + -0.7
806,000 - -0.1
806,000 - +0.4
806,174 + -0.9
806,211 + GFF1063 0.12 -0.9
806,211 + GFF1063 0.12 -0.3
806,211 + GFF1063 0.12 -0.3
806,211 + GFF1063 0.12 -0.3
806,211 + GFF1063 0.12 -0.3
806,211 + GFF1063 0.12 -0.4
806,211 + GFF1063 0.12 -0.4
806,211 + GFF1063 0.12 -0.4
806,211 + GFF1063 0.12 -0.0
806,211 + GFF1063 0.12 -0.2
806,212 - GFF1063 0.13 +0.4
806,212 - GFF1063 0.13 +0.7
806,212 - GFF1063 0.13 +0.2
806,212 - GFF1063 0.13 +1.0
806,212 - GFF1063 0.13 -0.2
806,215 - GFF1063 0.13 -0.1
806,215 - GFF1063 0.13 -0.0
806,215 - GFF1063 0.13 +0.1
806,239 + GFF1063 0.20 -0.1
806,239 + GFF1063 0.20 -0.8
806,239 + GFF1063 0.20 -1.1
806,239 + GFF1063 0.20 -0.8
806,240 - GFF1063 0.21 -0.3
806,240 - GFF1063 0.21 -0.2
806,240 - GFF1063 0.21 +0.4
806,253 + GFF1063 0.24 +1.6
806,253 + GFF1063 0.24 +0.0
806,253 + GFF1063 0.24 +1.1
806,253 + GFF1063 0.24 -0.2
806,253 + GFF1063 0.24 -0.1
806,253 + GFF1063 0.24 -1.0
806,254 - GFF1063 0.25 -0.6
806,254 - GFF1063 0.25 +0.4
806,364 + GFF1063 0.56 +0.0
806,364 + GFF1063 0.56 -0.6
806,364 + GFF1063 0.56 -0.1
806,364 + GFF1063 0.56 +0.4
806,364 + GFF1063 0.56 -0.0
806,364 + GFF1063 0.56 -0.2
806,365 - GFF1063 0.56 -1.8
806,365 - GFF1063 0.56 +1.0
806,410 + GFF1063 0.69 -0.4
806,410 + GFF1063 0.69 +0.4
806,410 + GFF1063 0.69 -0.9
806,410 + GFF1063 0.69 -2.3
806,411 - GFF1063 0.69 -0.4
806,411 - GFF1063 0.69 -0.4
806,411 - GFF1063 0.69 +1.0
806,411 - GFF1063 0.69 +0.3
806,411 - GFF1063 0.69 -1.2
806,684 + -0.8
806,684 + -0.4
806,685 - -0.0
806,714 + -0.6
806,714 + +0.3
806,715 - +0.2
806,715 - +0.4
806,827 - -0.4
806,912 + -0.7
806,912 + -0.1
806,979 + -0.6
806,980 - -0.3
807,054 + -0.3
807,055 - +1.3
807,056 + -0.6
807,057 - -0.3
807,068 + -0.2
807,069 - +0.1
807,107 + -0.3
807,107 + +0.3
807,108 - +0.1
807,184 + +0.4
807,184 + +1.6
807,184 + +0.4
807,185 - -0.5
807,185 - -0.9
807,231 + +1.0
807,232 - -0.1
807,232 - -0.9
807,491 - GFF1064 0.17 +1.0

Or see this region's nucleotide sequence