Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1005 and GFF1006 are separated by 107 nucleotides GFF1006 and GFF1007 are separated by 319 nucleotides GFF1007 and GFF1008 are separated by 194 nucleotides GFF1008 and GFF1009 are separated by 6 nucleotides
GFF1005 - hypothetical protein, at 743,773 to 745,020
GFF1005
GFF1006 - hypothetical protein, at 745,128 to 745,253
GFF1006
GFF1007 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 745,573 to 746,394
GFF1007
GFF1008 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 746,589 to 747,368
GFF1008
GFF1009 - Tricarboxylate transport protein TctC, at 747,375 to 748,355
GFF1009
Position (kb) 745
746
747 Strain fitness (log2 ratio) -2
-1
0
1
2 at 744.680 kb on + strand, within GFF1005 at 744.837 kb on + strand, within GFF1005 at 744.838 kb on - strand, within GFF1005 at 744.868 kb on + strand, within GFF1005 at 744.869 kb on - strand, within GFF1005 at 745.096 kb on - strand at 745.224 kb on + strand, within GFF1006 at 745.225 kb on - strand, within GFF1006 at 745.227 kb on + strand, within GFF1006 at 745.227 kb on + strand, within GFF1006 at 745.228 kb on - strand, within GFF1006 at 745.228 kb on - strand, within GFF1006 at 745.228 kb on - strand, within GFF1006 at 745.252 kb on - strand at 745.252 kb on - strand at 745.322 kb on + strand at 745.409 kb on + strand at 745.409 kb on + strand at 745.409 kb on + strand at 745.422 kb on - strand at 745.555 kb on - strand at 745.574 kb on + strand at 745.740 kb on + strand, within GFF1007 at 745.741 kb on - strand, within GFF1007 at 745.825 kb on + strand, within GFF1007 at 745.825 kb on + strand, within GFF1007 at 745.826 kb on - strand, within GFF1007 at 745.905 kb on - strand, within GFF1007 at 745.964 kb on + strand, within GFF1007 at 746.120 kb on + strand, within GFF1007 at 746.120 kb on + strand, within GFF1007 at 746.175 kb on + strand, within GFF1007 at 746.175 kb on + strand, within GFF1007 at 746.175 kb on + strand, within GFF1007 at 746.175 kb on + strand, within GFF1007 at 746.175 kb on + strand, within GFF1007 at 746.175 kb on + strand, within GFF1007 at 746.175 kb on + strand, within GFF1007 at 746.175 kb on + strand, within GFF1007 at 746.176 kb on - strand, within GFF1007 at 746.176 kb on - strand, within GFF1007 at 746.176 kb on - strand, within GFF1007 at 746.176 kb on - strand, within GFF1007 at 746.176 kb on - strand, within GFF1007 at 746.297 kb on + strand, within GFF1007 at 746.297 kb on + strand, within GFF1007 at 746.298 kb on - strand, within GFF1007 at 746.298 kb on - strand, within GFF1007 at 746.298 kb on - strand, within GFF1007 at 746.298 kb on - strand, within GFF1007 at 746.298 kb on - strand, within GFF1007 at 746.381 kb on + strand at 746.381 kb on + strand at 746.382 kb on - strand at 746.418 kb on + strand at 746.418 kb on + strand at 746.481 kb on + strand at 746.481 kb on + strand at 746.482 kb on - strand at 746.513 kb on + strand at 746.513 kb on + strand at 746.513 kb on + strand at 746.514 kb on - strand at 746.514 kb on - strand at 746.514 kb on - strand at 746.555 kb on + strand at 746.586 kb on + strand at 746.590 kb on + strand at 746.590 kb on + strand at 746.590 kb on + strand at 746.590 kb on + strand at 746.591 kb on - strand at 746.591 kb on - strand at 746.659 kb on - strand at 746.659 kb on - strand at 746.996 kb on - strand, within GFF1008
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 744,680 + GFF1005 0.73 +0.7 744,837 + GFF1005 0.85 +0.7 744,838 - GFF1005 0.85 +0.4 744,868 + GFF1005 0.88 -0.1 744,869 - GFF1005 0.88 +0.2 745,096 - -0.2 745,224 + GFF1006 0.76 -0.1 745,225 - GFF1006 0.77 +0.4 745,227 + GFF1006 0.79 +0.2 745,227 + GFF1006 0.79 -0.2 745,228 - GFF1006 0.79 +0.6 745,228 - GFF1006 0.79 -0.3 745,228 - GFF1006 0.79 -0.6 745,252 - +1.0 745,252 - -0.7 745,322 + -0.0 745,409 + +0.4 745,409 + +0.0 745,409 + +0.6 745,422 - +0.1 745,555 - -0.0 745,574 + +0.5 745,740 + GFF1007 0.20 -0.4 745,741 - GFF1007 0.20 -1.2 745,825 + GFF1007 0.31 +0.1 745,825 + GFF1007 0.31 +0.2 745,826 - GFF1007 0.31 -0.3 745,905 - GFF1007 0.40 -0.3 745,964 + GFF1007 0.48 -1.4 746,120 + GFF1007 0.67 -1.8 746,120 + GFF1007 0.67 -0.4 746,175 + GFF1007 0.73 +2.0 746,175 + GFF1007 0.73 -0.4 746,175 + GFF1007 0.73 -1.0 746,175 + GFF1007 0.73 +0.5 746,175 + GFF1007 0.73 -0.0 746,175 + GFF1007 0.73 -0.4 746,175 + GFF1007 0.73 -0.9 746,175 + GFF1007 0.73 +0.1 746,176 - GFF1007 0.73 +0.5 746,176 - GFF1007 0.73 +1.0 746,176 - GFF1007 0.73 +0.4 746,176 - GFF1007 0.73 +0.6 746,176 - GFF1007 0.73 +0.3 746,297 + GFF1007 0.88 -0.5 746,297 + GFF1007 0.88 -0.5 746,298 - GFF1007 0.88 -0.6 746,298 - GFF1007 0.88 -0.1 746,298 - GFF1007 0.88 -0.0 746,298 - GFF1007 0.88 -0.1 746,298 - GFF1007 0.88 -0.0 746,381 + +0.1 746,381 + -0.5 746,382 - -0.3 746,418 + +0.1 746,418 + -1.0 746,481 + -0.2 746,481 + -0.3 746,482 - +1.0 746,513 + +0.6 746,513 + +0.5 746,513 + +0.1 746,514 - +0.4 746,514 - -0.3 746,514 - -0.0 746,555 + +0.0 746,586 + +0.3 746,590 + -0.3 746,590 + +0.5 746,590 + +0.8 746,590 + +0.4 746,591 - -2.0 746,591 - -0.4 746,659 - -0.3 746,659 - -0.0 746,996 - GFF1008 0.52 +0.1
Or see this region's nucleotide sequence