Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS04800

Experiment: Right Thigh 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR41_RS04795 and RR41_RS04800 are separated by 263 nucleotidesRR41_RS04800 and RR41_RS04805 are separated by 1 nucleotides RR41_RS04795: RR41_RS04795 - sulfate ABC transporter substrate-binding protein, at 990,149 to 991,156 _RS04795 RR41_RS04800: RR41_RS04800 - aminodeoxychorismate lyase, at 991,420 to 992,232 _RS04800 RR41_RS04805: RR41_RS04805 - endolytic transglycosylase MltG, at 992,234 to 993,304 _RS04805 Position (kb) 991 992 993Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 990.448 kb on + strand, within RR41_RS04795at 990.452 kb on + strand, within RR41_RS04795at 990.500 kb on + strand, within RR41_RS04795at 990.500 kb on + strand, within RR41_RS04795at 990.500 kb on + strand, within RR41_RS04795at 990.500 kb on + strand, within RR41_RS04795at 990.501 kb on - strand, within RR41_RS04795at 990.530 kb on + strand, within RR41_RS04795at 990.531 kb on - strand, within RR41_RS04795at 990.531 kb on - strand, within RR41_RS04795at 990.560 kb on - strand, within RR41_RS04795at 990.588 kb on - strand, within RR41_RS04795at 990.605 kb on - strand, within RR41_RS04795at 990.643 kb on + strand, within RR41_RS04795at 990.684 kb on + strand, within RR41_RS04795at 990.685 kb on - strand, within RR41_RS04795at 990.727 kb on + strand, within RR41_RS04795at 990.727 kb on + strand, within RR41_RS04795at 990.749 kb on + strand, within RR41_RS04795at 990.750 kb on - strand, within RR41_RS04795at 990.767 kb on - strand, within RR41_RS04795at 990.817 kb on - strand, within RR41_RS04795at 990.817 kb on - strand, within RR41_RS04795at 990.817 kb on - strand, within RR41_RS04795at 990.909 kb on - strand, within RR41_RS04795at 990.909 kb on - strand, within RR41_RS04795at 990.942 kb on - strand, within RR41_RS04795at 990.983 kb on - strand, within RR41_RS04795at 991.017 kb on + strand, within RR41_RS04795at 991.017 kb on + strand, within RR41_RS04795at 991.018 kb on - strand, within RR41_RS04795at 991.018 kb on - strand, within RR41_RS04795at 991.047 kb on + strand, within RR41_RS04795at 991.048 kb on - strand, within RR41_RS04795at 991.048 kb on - strand, within RR41_RS04795at 991.049 kb on + strand, within RR41_RS04795at 991.049 kb on + strand, within RR41_RS04795at 991.049 kb on + strand, within RR41_RS04795at 991.050 kb on - strand, within RR41_RS04795at 991.050 kb on - strand, within RR41_RS04795at 991.116 kb on - strandat 991.116 kb on - strandat 991.162 kb on - strandat 991.303 kb on + strandat 991.304 kb on - strandat 991.304 kb on - strandat 991.328 kb on + strandat 991.384 kb on - strandat 991.403 kb on + strandat 991.415 kb on + strandat 991.448 kb on + strandat 991.525 kb on - strand, within RR41_RS04800at 991.701 kb on + strand, within RR41_RS04800at 991.701 kb on + strand, within RR41_RS04800at 991.702 kb on - strand, within RR41_RS04800at 991.725 kb on + strand, within RR41_RS04800at 991.729 kb on + strand, within RR41_RS04800at 991.729 kb on + strand, within RR41_RS04800at 991.729 kb on + strand, within RR41_RS04800at 991.729 kb on + strand, within RR41_RS04800at 991.729 kb on + strand, within RR41_RS04800at 991.730 kb on - strand, within RR41_RS04800at 991.730 kb on - strand, within RR41_RS04800at 991.730 kb on - strand, within RR41_RS04800at 991.731 kb on + strand, within RR41_RS04800at 991.731 kb on + strand, within RR41_RS04800at 991.776 kb on + strand, within RR41_RS04800at 991.776 kb on + strand, within RR41_RS04800at 991.777 kb on - strand, within RR41_RS04800at 991.779 kb on - strand, within RR41_RS04800at 991.827 kb on - strand, within RR41_RS04800at 991.862 kb on + strand, within RR41_RS04800at 991.863 kb on - strand, within RR41_RS04800at 991.869 kb on - strand, within RR41_RS04800at 991.908 kb on - strand, within RR41_RS04800at 991.919 kb on + strand, within RR41_RS04800at 991.927 kb on + strand, within RR41_RS04800at 991.929 kb on + strand, within RR41_RS04800at 991.929 kb on + strand, within RR41_RS04800at 991.930 kb on - strand, within RR41_RS04800at 991.950 kb on + strand, within RR41_RS04800at 992.078 kb on + strand, within RR41_RS04800at 993.174 kb on + strand, within RR41_RS04805at 993.200 kb on + strandat 993.200 kb on + strandat 993.200 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Right Thigh 4
remove
990,448 + RR41_RS04795 0.30 -0.5
990,452 + RR41_RS04795 0.30 +2.1
990,500 + RR41_RS04795 0.35 -1.1
990,500 + RR41_RS04795 0.35 -0.1
990,500 + RR41_RS04795 0.35 -2.1
990,500 + RR41_RS04795 0.35 +0.5
990,501 - RR41_RS04795 0.35 +0.2
990,530 + RR41_RS04795 0.38 -1.1
990,531 - RR41_RS04795 0.38 +3.0
990,531 - RR41_RS04795 0.38 +0.7
990,560 - RR41_RS04795 0.41 -1.1
990,588 - RR41_RS04795 0.44 -0.9
990,605 - RR41_RS04795 0.45 -0.5
990,643 + RR41_RS04795 0.49 +0.5
990,684 + RR41_RS04795 0.53 +0.5
990,685 - RR41_RS04795 0.53 -1.7
990,727 + RR41_RS04795 0.57 +0.8
990,727 + RR41_RS04795 0.57 -0.5
990,749 + RR41_RS04795 0.60 -0.9
990,750 - RR41_RS04795 0.60 -1.7
990,767 - RR41_RS04795 0.61 -1.1
990,817 - RR41_RS04795 0.66 -0.1
990,817 - RR41_RS04795 0.66 -1.8
990,817 - RR41_RS04795 0.66 +0.5
990,909 - RR41_RS04795 0.75 -0.1
990,909 - RR41_RS04795 0.75 -1.1
990,942 - RR41_RS04795 0.79 +0.5
990,983 - RR41_RS04795 0.83 +0.1
991,017 + RR41_RS04795 0.86 -0.2
991,017 + RR41_RS04795 0.86 -0.5
991,018 - RR41_RS04795 0.86 +4.3
991,018 - RR41_RS04795 0.86 +0.3
991,047 + RR41_RS04795 0.89 -0.8
991,048 - RR41_RS04795 0.89 -2.5
991,048 - RR41_RS04795 0.89 -2.1
991,049 + RR41_RS04795 0.89 -0.5
991,049 + RR41_RS04795 0.89 -1.5
991,049 + RR41_RS04795 0.89 +0.0
991,050 - RR41_RS04795 0.89 +0.5
991,050 - RR41_RS04795 0.89 -1.7
991,116 - +1.5
991,116 - -2.1
991,162 - -1.5
991,303 + +0.5
991,304 - +0.7
991,304 - +0.5
991,328 + +0.2
991,384 - +0.5
991,403 + +2.5
991,415 + +1.5
991,448 + -1.3
991,525 - RR41_RS04800 0.13 -1.5
991,701 + RR41_RS04800 0.35 -2.3
991,701 + RR41_RS04800 0.35 +1.7
991,702 - RR41_RS04800 0.35 -1.8
991,725 + RR41_RS04800 0.38 -0.5
991,729 + RR41_RS04800 0.38 +0.5
991,729 + RR41_RS04800 0.38 -2.8
991,729 + RR41_RS04800 0.38 -2.3
991,729 + RR41_RS04800 0.38 -2.5
991,729 + RR41_RS04800 0.38 -1.5
991,730 - RR41_RS04800 0.38 -1.1
991,730 - RR41_RS04800 0.38 -1.5
991,730 - RR41_RS04800 0.38 +0.5
991,731 + RR41_RS04800 0.38 -2.1
991,731 + RR41_RS04800 0.38 -2.1
991,776 + RR41_RS04800 0.44 -2.3
991,776 + RR41_RS04800 0.44 -0.5
991,777 - RR41_RS04800 0.44 -0.8
991,779 - RR41_RS04800 0.44 -1.1
991,827 - RR41_RS04800 0.50 +1.5
991,862 + RR41_RS04800 0.54 -1.3
991,863 - RR41_RS04800 0.54 -0.5
991,869 - RR41_RS04800 0.55 -3.0
991,908 - RR41_RS04800 0.60 -2.1
991,919 + RR41_RS04800 0.61 -0.5
991,927 + RR41_RS04800 0.62 +1.5
991,929 + RR41_RS04800 0.63 -1.5
991,929 + RR41_RS04800 0.63 -0.1
991,930 - RR41_RS04800 0.63 -1.1
991,950 + RR41_RS04800 0.65 -1.1
992,078 + RR41_RS04800 0.81 -1.5
993,174 + RR41_RS04805 0.88 +0.5
993,200 + -0.5
993,200 + -0.5
993,200 + -0.2

Or see this region's nucleotide sequence