Experiment: LZ4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03152 and OHPLBJKB_03153 are separated by 1 nucleotides OHPLBJKB_03153 and OHPLBJKB_03154 are separated by 107 nucleotides OHPLBJKB_03154 and OHPLBJKB_03155 are separated by 35 nucleotides OHPLBJKB_03155 and OHPLBJKB_03156 are separated by 173 nucleotides OHPLBJKB_03156 and OHPLBJKB_03157 are separated by 2 nucleotides
OHPLBJKB_03152: OHPLBJKB_03152 - Bifunctional protein FolD protein, at 3,285,376 to 3,286,242
_03152
OHPLBJKB_03153: OHPLBJKB_03153 - putative protein YbcJ, at 3,286,244 to 3,286,456
_03153
OHPLBJKB_03154: OHPLBJKB_03154 - Inner membrane protein YbcI, at 3,286,564 to 3,287,085
_03154
OHPLBJKB_03155: OHPLBJKB_03155 - Cysteine--tRNA ligase, at 3,287,121 to 3,288,506
_03155
OHPLBJKB_03156: OHPLBJKB_03156 - Peptidyl-prolyl cis-trans isomerase B, at 3,288,680 to 3,289,174
_03156
OHPLBJKB_03157: OHPLBJKB_03157 - UDP-2,3-diacylglucosamine hydrolase, at 3,289,177 to 3,289,899
_03157
Position (kb)
3287
3288
3289 Strain fitness (log2 ratio)
-1
0
1
2 at 3286.441 kb on - strand at 3286.578 kb on + strand at 3286.611 kb on - strand at 3286.646 kb on + strand, within OHPLBJKB_03154 at 3286.647 kb on - strand, within OHPLBJKB_03154 at 3286.688 kb on + strand, within OHPLBJKB_03154 at 3286.688 kb on + strand, within OHPLBJKB_03154 at 3286.688 kb on + strand, within OHPLBJKB_03154 at 3286.689 kb on - strand, within OHPLBJKB_03154 at 3286.689 kb on - strand, within OHPLBJKB_03154 at 3286.781 kb on + strand, within OHPLBJKB_03154 at 3286.781 kb on + strand, within OHPLBJKB_03154 at 3286.781 kb on + strand, within OHPLBJKB_03154 at 3286.781 kb on + strand, within OHPLBJKB_03154 at 3287.013 kb on + strand, within OHPLBJKB_03154 at 3287.051 kb on + strand at 3287.122 kb on + strand at 3287.123 kb on - strand at 3287.123 kb on - strand at 3287.123 kb on - strand at 3287.127 kb on - strand at 3287.127 kb on - strand at 3287.127 kb on - strand at 3288.548 kb on - strand at 3288.548 kb on - strand at 3288.548 kb on - strand at 3288.550 kb on - strand at 3288.550 kb on - strand at 3288.550 kb on - strand at 3288.550 kb on - strand at 3288.553 kb on - strand at 3288.553 kb on - strand at 3288.579 kb on + strand at 3288.579 kb on + strand at 3288.579 kb on + strand at 3288.580 kb on - strand at 3288.580 kb on - strand at 3288.580 kb on - strand at 3288.580 kb on - strand at 3288.613 kb on + strand at 3288.613 kb on + strand at 3288.613 kb on + strand at 3288.613 kb on + strand at 3288.615 kb on + strand at 3288.615 kb on + strand at 3288.626 kb on + strand at 3288.626 kb on + strand at 3288.626 kb on + strand at 3288.626 kb on + strand at 3288.626 kb on + strand at 3288.626 kb on + strand at 3288.626 kb on + strand at 3288.626 kb on + strand at 3288.626 kb on + strand at 3288.626 kb on + strand at 3288.626 kb on + strand at 3288.628 kb on + strand at 3288.628 kb on + strand at 3288.628 kb on + strand at 3288.628 kb on + strand at 3288.628 kb on + strand at 3288.628 kb on + strand at 3288.628 kb on + strand at 3288.628 kb on + strand at 3288.628 kb on + strand at 3288.628 kb on + strand at 3288.628 kb on + strand at 3288.628 kb on + strand at 3288.628 kb on + strand at 3288.628 kb on + strand at 3288.628 kb on + strand at 3288.630 kb on + strand at 3288.630 kb on + strand at 3288.630 kb on + strand at 3288.630 kb on + strand at 3288.630 kb on + strand at 3288.630 kb on + strand at 3288.630 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LZ4 remove 3,286,441 - +0.1 3,286,578 + -0.5 3,286,611 - +0.7 3,286,646 + OHPLBJKB_03154 0.16 +0.5 3,286,647 - OHPLBJKB_03154 0.16 +0.4 3,286,688 + OHPLBJKB_03154 0.24 -0.2 3,286,688 + OHPLBJKB_03154 0.24 -0.5 3,286,688 + OHPLBJKB_03154 0.24 -1.4 3,286,689 - OHPLBJKB_03154 0.24 +0.1 3,286,689 - OHPLBJKB_03154 0.24 -0.6 3,286,781 + OHPLBJKB_03154 0.42 -1.4 3,286,781 + OHPLBJKB_03154 0.42 +0.2 3,286,781 + OHPLBJKB_03154 0.42 +0.1 3,286,781 + OHPLBJKB_03154 0.42 -1.1 3,287,013 + OHPLBJKB_03154 0.86 -1.2 3,287,051 + +0.0 3,287,122 + -1.4 3,287,123 - -0.2 3,287,123 - -0.3 3,287,123 - +0.1 3,287,127 - +0.5 3,287,127 - +0.1 3,287,127 - +0.4 3,288,548 - +0.4 3,288,548 - -0.8 3,288,548 - -0.2 3,288,550 - -0.2 3,288,550 - +1.3 3,288,550 - +1.4 3,288,550 - +0.0 3,288,553 - +1.4 3,288,553 - +0.4 3,288,579 + +0.4 3,288,579 + -1.2 3,288,579 + -0.2 3,288,580 - -0.7 3,288,580 - +0.6 3,288,580 - +1.2 3,288,580 - -0.8 3,288,613 + +0.3 3,288,613 + -0.5 3,288,613 + +1.4 3,288,613 + +0.1 3,288,615 + -0.9 3,288,615 + +1.3 3,288,626 + -0.6 3,288,626 + +0.1 3,288,626 + +1.3 3,288,626 + +1.1 3,288,626 + -0.0 3,288,626 + +1.4 3,288,626 + +0.8 3,288,626 + -0.2 3,288,626 + +0.4 3,288,626 + -0.7 3,288,626 + +0.0 3,288,628 + -0.2 3,288,628 + -0.4 3,288,628 + -0.7 3,288,628 + +1.8 3,288,628 + +0.1 3,288,628 + +0.4 3,288,628 + -0.6 3,288,628 + -0.9 3,288,628 + -0.3 3,288,628 + -0.7 3,288,628 + -0.7 3,288,628 + -0.9 3,288,628 + +0.7 3,288,628 + +0.1 3,288,628 + -0.4 3,288,630 + -0.8 3,288,630 + -0.3 3,288,630 + +1.4 3,288,630 + +0.8 3,288,630 + +0.9 3,288,630 + +1.1 3,288,630 + +1.1
Or see this region's nucleotide sequence