Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03155

Experiment: LZ4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03152 and OHPLBJKB_03153 are separated by 1 nucleotidesOHPLBJKB_03153 and OHPLBJKB_03154 are separated by 107 nucleotidesOHPLBJKB_03154 and OHPLBJKB_03155 are separated by 35 nucleotidesOHPLBJKB_03155 and OHPLBJKB_03156 are separated by 173 nucleotidesOHPLBJKB_03156 and OHPLBJKB_03157 are separated by 2 nucleotides OHPLBJKB_03152: OHPLBJKB_03152 - Bifunctional protein FolD protein, at 3,285,376 to 3,286,242 _03152 OHPLBJKB_03153: OHPLBJKB_03153 - putative protein YbcJ, at 3,286,244 to 3,286,456 _03153 OHPLBJKB_03154: OHPLBJKB_03154 - Inner membrane protein YbcI, at 3,286,564 to 3,287,085 _03154 OHPLBJKB_03155: OHPLBJKB_03155 - Cysteine--tRNA ligase, at 3,287,121 to 3,288,506 _03155 OHPLBJKB_03156: OHPLBJKB_03156 - Peptidyl-prolyl cis-trans isomerase B, at 3,288,680 to 3,289,174 _03156 OHPLBJKB_03157: OHPLBJKB_03157 - UDP-2,3-diacylglucosamine hydrolase, at 3,289,177 to 3,289,899 _03157 Position (kb) 3287 3288 3289Strain fitness (log2 ratio) -1 0 1 2at 3286.441 kb on - strandat 3286.578 kb on + strandat 3286.611 kb on - strandat 3286.646 kb on + strand, within OHPLBJKB_03154at 3286.647 kb on - strand, within OHPLBJKB_03154at 3286.688 kb on + strand, within OHPLBJKB_03154at 3286.688 kb on + strand, within OHPLBJKB_03154at 3286.688 kb on + strand, within OHPLBJKB_03154at 3286.689 kb on - strand, within OHPLBJKB_03154at 3286.689 kb on - strand, within OHPLBJKB_03154at 3286.781 kb on + strand, within OHPLBJKB_03154at 3286.781 kb on + strand, within OHPLBJKB_03154at 3286.781 kb on + strand, within OHPLBJKB_03154at 3286.781 kb on + strand, within OHPLBJKB_03154at 3287.013 kb on + strand, within OHPLBJKB_03154at 3287.051 kb on + strandat 3287.122 kb on + strandat 3287.123 kb on - strandat 3287.123 kb on - strandat 3287.123 kb on - strandat 3287.127 kb on - strandat 3287.127 kb on - strandat 3287.127 kb on - strandat 3288.548 kb on - strandat 3288.548 kb on - strandat 3288.548 kb on - strandat 3288.550 kb on - strandat 3288.550 kb on - strandat 3288.550 kb on - strandat 3288.550 kb on - strandat 3288.553 kb on - strandat 3288.553 kb on - strandat 3288.579 kb on + strandat 3288.579 kb on + strandat 3288.579 kb on + strandat 3288.580 kb on - strandat 3288.580 kb on - strandat 3288.580 kb on - strandat 3288.580 kb on - strandat 3288.613 kb on + strandat 3288.613 kb on + strandat 3288.613 kb on + strandat 3288.613 kb on + strandat 3288.615 kb on + strandat 3288.615 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.626 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.628 kb on + strandat 3288.630 kb on + strandat 3288.630 kb on + strandat 3288.630 kb on + strandat 3288.630 kb on + strandat 3288.630 kb on + strandat 3288.630 kb on + strandat 3288.630 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LZ4
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3,286,441 - +0.1
3,286,578 + -0.5
3,286,611 - +0.7
3,286,646 + OHPLBJKB_03154 0.16 +0.5
3,286,647 - OHPLBJKB_03154 0.16 +0.4
3,286,688 + OHPLBJKB_03154 0.24 -0.2
3,286,688 + OHPLBJKB_03154 0.24 -0.5
3,286,688 + OHPLBJKB_03154 0.24 -1.4
3,286,689 - OHPLBJKB_03154 0.24 +0.1
3,286,689 - OHPLBJKB_03154 0.24 -0.6
3,286,781 + OHPLBJKB_03154 0.42 -1.4
3,286,781 + OHPLBJKB_03154 0.42 +0.2
3,286,781 + OHPLBJKB_03154 0.42 +0.1
3,286,781 + OHPLBJKB_03154 0.42 -1.1
3,287,013 + OHPLBJKB_03154 0.86 -1.2
3,287,051 + +0.0
3,287,122 + -1.4
3,287,123 - -0.2
3,287,123 - -0.3
3,287,123 - +0.1
3,287,127 - +0.5
3,287,127 - +0.1
3,287,127 - +0.4
3,288,548 - +0.4
3,288,548 - -0.8
3,288,548 - -0.2
3,288,550 - -0.2
3,288,550 - +1.3
3,288,550 - +1.4
3,288,550 - +0.0
3,288,553 - +1.4
3,288,553 - +0.4
3,288,579 + +0.4
3,288,579 + -1.2
3,288,579 + -0.2
3,288,580 - -0.7
3,288,580 - +0.6
3,288,580 - +1.2
3,288,580 - -0.8
3,288,613 + +0.3
3,288,613 + -0.5
3,288,613 + +1.4
3,288,613 + +0.1
3,288,615 + -0.9
3,288,615 + +1.3
3,288,626 + -0.6
3,288,626 + +0.1
3,288,626 + +1.3
3,288,626 + +1.1
3,288,626 + -0.0
3,288,626 + +1.4
3,288,626 + +0.8
3,288,626 + -0.2
3,288,626 + +0.4
3,288,626 + -0.7
3,288,626 + +0.0
3,288,628 + -0.2
3,288,628 + -0.4
3,288,628 + -0.7
3,288,628 + +1.8
3,288,628 + +0.1
3,288,628 + +0.4
3,288,628 + -0.6
3,288,628 + -0.9
3,288,628 + -0.3
3,288,628 + -0.7
3,288,628 + -0.7
3,288,628 + -0.9
3,288,628 + +0.7
3,288,628 + +0.1
3,288,628 + -0.4
3,288,630 + -0.8
3,288,630 + -0.3
3,288,630 + +1.4
3,288,630 + +0.8
3,288,630 + +0.9
3,288,630 + +1.1
3,288,630 + +1.1

Or see this region's nucleotide sequence