Experiment: LZ4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02671 and OHPLBJKB_02672 are separated by 129 nucleotides OHPLBJKB_02672 and OHPLBJKB_02673 overlap by 28 nucleotides
OHPLBJKB_02671: OHPLBJKB_02671 - Cytochrome c-type protein TorC, at 2,782,547 to 2,783,719
_02671
OHPLBJKB_02672: OHPLBJKB_02672 - TorCAD operon transcriptional regulatory protein TorR, at 2,783,849 to 2,784,541
_02672
OHPLBJKB_02673: OHPLBJKB_02673 - Periplasmic protein TorT, at 2,784,514 to 2,785,542
_02673
Position (kb)
2783
2784
2785 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2782.925 kb on - strand, within OHPLBJKB_02671 at 2783.100 kb on + strand, within OHPLBJKB_02671 at 2783.191 kb on + strand, within OHPLBJKB_02671 at 2783.289 kb on + strand, within OHPLBJKB_02671 at 2783.289 kb on + strand, within OHPLBJKB_02671 at 2783.290 kb on - strand, within OHPLBJKB_02671 at 2783.290 kb on - strand, within OHPLBJKB_02671 at 2783.294 kb on - strand, within OHPLBJKB_02671 at 2783.294 kb on - strand, within OHPLBJKB_02671 at 2783.389 kb on + strand, within OHPLBJKB_02671 at 2783.418 kb on + strand, within OHPLBJKB_02671 at 2783.418 kb on + strand, within OHPLBJKB_02671 at 2783.419 kb on - strand, within OHPLBJKB_02671 at 2783.419 kb on - strand, within OHPLBJKB_02671 at 2783.419 kb on - strand, within OHPLBJKB_02671 at 2783.423 kb on - strand, within OHPLBJKB_02671 at 2783.423 kb on - strand, within OHPLBJKB_02671 at 2783.536 kb on + strand, within OHPLBJKB_02671 at 2783.538 kb on + strand, within OHPLBJKB_02671 at 2783.539 kb on - strand, within OHPLBJKB_02671 at 2783.547 kb on + strand, within OHPLBJKB_02671 at 2783.560 kb on + strand, within OHPLBJKB_02671 at 2783.560 kb on + strand, within OHPLBJKB_02671 at 2783.561 kb on - strand, within OHPLBJKB_02671 at 2783.561 kb on - strand, within OHPLBJKB_02671 at 2783.561 kb on - strand, within OHPLBJKB_02671 at 2783.561 kb on - strand, within OHPLBJKB_02671 at 2783.622 kb on - strand at 2783.759 kb on - strand at 2783.770 kb on - strand at 2783.770 kb on - strand at 2783.770 kb on - strand at 2783.770 kb on - strand at 2783.909 kb on + strand at 2783.928 kb on - strand, within OHPLBJKB_02672 at 2783.972 kb on - strand, within OHPLBJKB_02672 at 2783.988 kb on + strand, within OHPLBJKB_02672 at 2783.994 kb on + strand, within OHPLBJKB_02672 at 2783.994 kb on + strand, within OHPLBJKB_02672 at 2784.112 kb on + strand, within OHPLBJKB_02672 at 2784.113 kb on - strand, within OHPLBJKB_02672 at 2784.113 kb on - strand, within OHPLBJKB_02672 at 2784.396 kb on + strand, within OHPLBJKB_02672 at 2784.397 kb on - strand, within OHPLBJKB_02672 at 2784.401 kb on - strand, within OHPLBJKB_02672 at 2784.401 kb on - strand, within OHPLBJKB_02672 at 2784.401 kb on - strand, within OHPLBJKB_02672 at 2784.454 kb on - strand, within OHPLBJKB_02672 at 2784.465 kb on + strand, within OHPLBJKB_02672 at 2784.490 kb on - strand at 2784.516 kb on - strand at 2784.548 kb on + strand at 2784.622 kb on + strand, within OHPLBJKB_02673 at 2784.665 kb on - strand, within OHPLBJKB_02673 at 2784.665 kb on - strand, within OHPLBJKB_02673 at 2784.904 kb on - strand, within OHPLBJKB_02673 at 2784.939 kb on + strand, within OHPLBJKB_02673 at 2784.948 kb on + strand, within OHPLBJKB_02673 at 2785.143 kb on + strand, within OHPLBJKB_02673 at 2785.144 kb on - strand, within OHPLBJKB_02673 at 2785.177 kb on + strand, within OHPLBJKB_02673 at 2785.178 kb on - strand, within OHPLBJKB_02673 at 2785.213 kb on - strand, within OHPLBJKB_02673 at 2785.248 kb on + strand, within OHPLBJKB_02673 at 2785.249 kb on - strand, within OHPLBJKB_02673 at 2785.313 kb on - strand, within OHPLBJKB_02673 at 2785.313 kb on - strand, within OHPLBJKB_02673 at 2785.348 kb on - strand, within OHPLBJKB_02673 at 2785.352 kb on + strand, within OHPLBJKB_02673 at 2785.528 kb on + strand at 2785.534 kb on + strand at 2785.534 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LZ4 remove 2,782,925 - OHPLBJKB_02671 0.32 -0.5 2,783,100 + OHPLBJKB_02671 0.47 +0.6 2,783,191 + OHPLBJKB_02671 0.55 -0.9 2,783,289 + OHPLBJKB_02671 0.63 +0.2 2,783,289 + OHPLBJKB_02671 0.63 +0.5 2,783,290 - OHPLBJKB_02671 0.63 +0.5 2,783,290 - OHPLBJKB_02671 0.63 +0.3 2,783,294 - OHPLBJKB_02671 0.64 -0.2 2,783,294 - OHPLBJKB_02671 0.64 +0.8 2,783,389 + OHPLBJKB_02671 0.72 -0.7 2,783,418 + OHPLBJKB_02671 0.74 -0.2 2,783,418 + OHPLBJKB_02671 0.74 +0.0 2,783,419 - OHPLBJKB_02671 0.74 +0.5 2,783,419 - OHPLBJKB_02671 0.74 -0.1 2,783,419 - OHPLBJKB_02671 0.74 +0.8 2,783,423 - OHPLBJKB_02671 0.75 -0.5 2,783,423 - OHPLBJKB_02671 0.75 +0.3 2,783,536 + OHPLBJKB_02671 0.84 +0.3 2,783,538 + OHPLBJKB_02671 0.84 +0.2 2,783,539 - OHPLBJKB_02671 0.85 -0.8 2,783,547 + OHPLBJKB_02671 0.85 -0.1 2,783,560 + OHPLBJKB_02671 0.86 +0.0 2,783,560 + OHPLBJKB_02671 0.86 +1.1 2,783,561 - OHPLBJKB_02671 0.86 -0.5 2,783,561 - OHPLBJKB_02671 0.86 -0.4 2,783,561 - OHPLBJKB_02671 0.86 -1.2 2,783,561 - OHPLBJKB_02671 0.86 -0.7 2,783,622 - -0.1 2,783,759 - +0.3 2,783,770 - -1.8 2,783,770 - +0.5 2,783,770 - +0.5 2,783,770 - +0.2 2,783,909 + -0.8 2,783,928 - OHPLBJKB_02672 0.11 -1.0 2,783,972 - OHPLBJKB_02672 0.18 -0.2 2,783,988 + OHPLBJKB_02672 0.20 +0.5 2,783,994 + OHPLBJKB_02672 0.21 -0.5 2,783,994 + OHPLBJKB_02672 0.21 +0.9 2,784,112 + OHPLBJKB_02672 0.38 -0.4 2,784,113 - OHPLBJKB_02672 0.38 -0.5 2,784,113 - OHPLBJKB_02672 0.38 +1.2 2,784,396 + OHPLBJKB_02672 0.79 -1.1 2,784,397 - OHPLBJKB_02672 0.79 -1.5 2,784,401 - OHPLBJKB_02672 0.80 -0.7 2,784,401 - OHPLBJKB_02672 0.80 -0.7 2,784,401 - OHPLBJKB_02672 0.80 -1.5 2,784,454 - OHPLBJKB_02672 0.87 +1.5 2,784,465 + OHPLBJKB_02672 0.89 -0.5 2,784,490 - +0.8 2,784,516 - +0.8 2,784,548 + -0.1 2,784,622 + OHPLBJKB_02673 0.10 +0.1 2,784,665 - OHPLBJKB_02673 0.15 -0.2 2,784,665 - OHPLBJKB_02673 0.15 -1.2 2,784,904 - OHPLBJKB_02673 0.38 -0.0 2,784,939 + OHPLBJKB_02673 0.41 +0.1 2,784,948 + OHPLBJKB_02673 0.42 +0.0 2,785,143 + OHPLBJKB_02673 0.61 +1.8 2,785,144 - OHPLBJKB_02673 0.61 +0.8 2,785,177 + OHPLBJKB_02673 0.64 +0.4 2,785,178 - OHPLBJKB_02673 0.65 +2.1 2,785,213 - OHPLBJKB_02673 0.68 -0.2 2,785,248 + OHPLBJKB_02673 0.71 +0.0 2,785,249 - OHPLBJKB_02673 0.71 -0.6 2,785,313 - OHPLBJKB_02673 0.78 -0.3 2,785,313 - OHPLBJKB_02673 0.78 +0.9 2,785,348 - OHPLBJKB_02673 0.81 +0.9 2,785,352 + OHPLBJKB_02673 0.81 +0.1 2,785,528 + -0.6 2,785,534 + +0.0 2,785,534 + +1.3
Or see this region's nucleotide sequence