Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02550

Experiment: LZ4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02548 and OHPLBJKB_02549 are separated by 5 nucleotidesOHPLBJKB_02549 and OHPLBJKB_02550 overlap by 8 nucleotidesOHPLBJKB_02550 and OHPLBJKB_02551 are separated by 261 nucleotides OHPLBJKB_02548: OHPLBJKB_02548 - Lipoprotein-releasing system transmembrane protein LolE, at 2,660,374 to 2,661,612 _02548 OHPLBJKB_02549: OHPLBJKB_02549 - Lipoprotein-releasing system ATP-binding protein LolD, at 2,661,618 to 2,662,319 _02549 OHPLBJKB_02550: OHPLBJKB_02550 - Lipoprotein-releasing system transmembrane protein LolC, at 2,662,312 to 2,663,511 _02550 OHPLBJKB_02551: OHPLBJKB_02551 - Inner membrane protein YcfT, at 2,663,773 to 2,664,846 _02551 Position (kb) 2662 2663 2664Strain fitness (log2 ratio) -1 0 1 2at 2663.550 kb on + strandat 2663.550 kb on + strandat 2663.550 kb on + strandat 2663.551 kb on - strandat 2663.551 kb on - strandat 2663.551 kb on - strandat 2663.551 kb on - strandat 2663.585 kb on - strandat 2663.672 kb on + strandat 2663.709 kb on + strandat 2663.715 kb on + strandat 2663.715 kb on + strandat 2663.716 kb on - strandat 2663.716 kb on - strandat 2663.716 kb on - strandat 2663.746 kb on + strandat 2663.746 kb on + strandat 2663.747 kb on - strandat 2663.789 kb on + strandat 2663.813 kb on + strandat 2663.817 kb on + strandat 2663.817 kb on + strandat 2663.817 kb on + strandat 2663.818 kb on - strandat 2663.918 kb on - strand, within OHPLBJKB_02551at 2663.989 kb on + strand, within OHPLBJKB_02551at 2663.989 kb on + strand, within OHPLBJKB_02551at 2664.002 kb on + strand, within OHPLBJKB_02551at 2664.125 kb on + strand, within OHPLBJKB_02551at 2664.126 kb on - strand, within OHPLBJKB_02551at 2664.126 kb on - strand, within OHPLBJKB_02551at 2664.148 kb on + strand, within OHPLBJKB_02551at 2664.148 kb on + strand, within OHPLBJKB_02551at 2664.214 kb on + strand, within OHPLBJKB_02551at 2664.221 kb on + strand, within OHPLBJKB_02551at 2664.230 kb on - strand, within OHPLBJKB_02551at 2664.269 kb on + strand, within OHPLBJKB_02551at 2664.272 kb on + strand, within OHPLBJKB_02551at 2664.272 kb on + strand, within OHPLBJKB_02551at 2664.272 kb on + strand, within OHPLBJKB_02551at 2664.287 kb on + strand, within OHPLBJKB_02551at 2664.364 kb on + strand, within OHPLBJKB_02551at 2664.365 kb on - strand, within OHPLBJKB_02551at 2664.396 kb on - strand, within OHPLBJKB_02551at 2664.396 kb on - strand, within OHPLBJKB_02551at 2664.437 kb on + strand, within OHPLBJKB_02551at 2664.483 kb on + strand, within OHPLBJKB_02551at 2664.487 kb on - strand, within OHPLBJKB_02551

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Per-strain Table

Position Strand Gene LocusTag Fraction LZ4
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2,663,550 + +0.7
2,663,550 + +1.1
2,663,550 + +0.8
2,663,551 - -1.0
2,663,551 - -1.0
2,663,551 - -0.1
2,663,551 - +1.0
2,663,585 - -1.0
2,663,672 + +0.7
2,663,709 + -1.2
2,663,715 + -1.0
2,663,715 + +0.2
2,663,716 - +2.1
2,663,716 - -0.3
2,663,716 - +0.1
2,663,746 + -1.1
2,663,746 + +0.0
2,663,747 - +1.8
2,663,789 + +0.5
2,663,813 + -0.1
2,663,817 + -0.1
2,663,817 + -0.5
2,663,817 + +0.1
2,663,818 - +1.3
2,663,918 - OHPLBJKB_02551 0.14 +0.9
2,663,989 + OHPLBJKB_02551 0.20 -0.0
2,663,989 + OHPLBJKB_02551 0.20 -0.9
2,664,002 + OHPLBJKB_02551 0.21 +0.5
2,664,125 + OHPLBJKB_02551 0.33 +0.9
2,664,126 - OHPLBJKB_02551 0.33 +0.6
2,664,126 - OHPLBJKB_02551 0.33 +1.3
2,664,148 + OHPLBJKB_02551 0.35 -0.7
2,664,148 + OHPLBJKB_02551 0.35 +0.4
2,664,214 + OHPLBJKB_02551 0.41 +0.9
2,664,221 + OHPLBJKB_02551 0.42 +0.3
2,664,230 - OHPLBJKB_02551 0.43 -0.2
2,664,269 + OHPLBJKB_02551 0.46 +1.3
2,664,272 + OHPLBJKB_02551 0.46 -0.9
2,664,272 + OHPLBJKB_02551 0.46 -0.8
2,664,272 + OHPLBJKB_02551 0.46 +1.1
2,664,287 + OHPLBJKB_02551 0.48 +0.8
2,664,364 + OHPLBJKB_02551 0.55 +1.1
2,664,365 - OHPLBJKB_02551 0.55 -0.2
2,664,396 - OHPLBJKB_02551 0.58 +0.2
2,664,396 - OHPLBJKB_02551 0.58 +0.3
2,664,437 + OHPLBJKB_02551 0.62 +0.6
2,664,483 + OHPLBJKB_02551 0.66 +0.8
2,664,487 - OHPLBJKB_02551 0.66 +1.6

Or see this region's nucleotide sequence