Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00534

Experiment: LZ4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00532 and OHPLBJKB_00533 are separated by 163 nucleotidesOHPLBJKB_00533 and OHPLBJKB_00534 overlap by 1 nucleotidesOHPLBJKB_00534 and OHPLBJKB_00535 are separated by 148 nucleotidesOHPLBJKB_00535 and OHPLBJKB_00536 are separated by 246 nucleotides OHPLBJKB_00532: OHPLBJKB_00532 - Translation initiation factor IF-2, at 543,961 to 546,633 _00532 OHPLBJKB_00533: OHPLBJKB_00533 - 30S ribosome-binding factor, at 546,797 to 547,198 _00533 OHPLBJKB_00534: OHPLBJKB_00534 - tRNA pseudouridine synthase B, at 547,198 to 548,142 _00534 OHPLBJKB_00535: OHPLBJKB_00535 - 30S ribosomal protein S15, at 548,291 to 548,560 _00535 OHPLBJKB_00536: OHPLBJKB_00536 - Polyribonucleotide nucleotidyltransferase, at 548,807 to 550,942 _00536 Position (kb) 547 548 549Strain fitness (log2 ratio) -2 -1 0 1 2at 546.596 kb on + strandat 546.621 kb on + strandat 546.621 kb on + strandat 546.640 kb on + strandat 546.748 kb on + strandat 547.171 kb on + strandat 547.197 kb on - strandat 547.251 kb on + strandat 547.263 kb on + strandat 547.263 kb on + strandat 547.264 kb on - strandat 547.264 kb on - strandat 547.299 kb on + strand, within OHPLBJKB_00534at 547.299 kb on + strand, within OHPLBJKB_00534at 547.299 kb on + strand, within OHPLBJKB_00534at 547.299 kb on + strand, within OHPLBJKB_00534at 547.299 kb on + strand, within OHPLBJKB_00534at 547.300 kb on - strand, within OHPLBJKB_00534at 547.300 kb on - strand, within OHPLBJKB_00534at 547.300 kb on - strand, within OHPLBJKB_00534at 547.300 kb on - strand, within OHPLBJKB_00534at 547.300 kb on - strand, within OHPLBJKB_00534at 547.300 kb on - strand, within OHPLBJKB_00534at 547.301 kb on + strand, within OHPLBJKB_00534at 547.301 kb on + strand, within OHPLBJKB_00534at 547.301 kb on + strand, within OHPLBJKB_00534at 547.301 kb on + strand, within OHPLBJKB_00534at 547.301 kb on + strand, within OHPLBJKB_00534at 547.301 kb on + strand, within OHPLBJKB_00534at 547.301 kb on + strand, within OHPLBJKB_00534at 547.301 kb on + strand, within OHPLBJKB_00534at 547.302 kb on - strand, within OHPLBJKB_00534at 547.302 kb on - strand, within OHPLBJKB_00534at 547.302 kb on - strand, within OHPLBJKB_00534at 547.303 kb on + strand, within OHPLBJKB_00534at 547.303 kb on + strand, within OHPLBJKB_00534at 547.303 kb on + strand, within OHPLBJKB_00534at 547.303 kb on + strand, within OHPLBJKB_00534at 547.303 kb on + strand, within OHPLBJKB_00534at 547.303 kb on + strand, within OHPLBJKB_00534at 547.303 kb on + strand, within OHPLBJKB_00534at 547.303 kb on + strand, within OHPLBJKB_00534at 547.303 kb on + strand, within OHPLBJKB_00534at 547.303 kb on + strand, within OHPLBJKB_00534at 547.304 kb on - strand, within OHPLBJKB_00534at 547.304 kb on - strand, within OHPLBJKB_00534at 547.304 kb on - strand, within OHPLBJKB_00534at 547.304 kb on - strand, within OHPLBJKB_00534at 547.304 kb on - strand, within OHPLBJKB_00534at 547.304 kb on - strand, within OHPLBJKB_00534at 547.304 kb on - strand, within OHPLBJKB_00534at 547.304 kb on - strand, within OHPLBJKB_00534at 547.304 kb on - strand, within OHPLBJKB_00534at 547.304 kb on - strand, within OHPLBJKB_00534at 547.304 kb on - strand, within OHPLBJKB_00534at 547.304 kb on - strand, within OHPLBJKB_00534at 547.304 kb on - strand, within OHPLBJKB_00534at 547.305 kb on + strand, within OHPLBJKB_00534at 547.305 kb on + strand, within OHPLBJKB_00534at 547.305 kb on + strand, within OHPLBJKB_00534at 547.305 kb on + strand, within OHPLBJKB_00534at 547.305 kb on + strand, within OHPLBJKB_00534at 547.306 kb on - strand, within OHPLBJKB_00534at 547.458 kb on + strand, within OHPLBJKB_00534at 547.459 kb on - strand, within OHPLBJKB_00534at 547.459 kb on - strand, within OHPLBJKB_00534at 547.588 kb on + strand, within OHPLBJKB_00534at 547.588 kb on + strand, within OHPLBJKB_00534at 547.589 kb on - strand, within OHPLBJKB_00534at 547.732 kb on + strand, within OHPLBJKB_00534at 547.732 kb on + strand, within OHPLBJKB_00534at 547.732 kb on + strand, within OHPLBJKB_00534at 547.732 kb on + strand, within OHPLBJKB_00534at 547.732 kb on + strand, within OHPLBJKB_00534at 547.732 kb on + strand, within OHPLBJKB_00534at 547.732 kb on + strand, within OHPLBJKB_00534at 547.732 kb on + strand, within OHPLBJKB_00534at 547.732 kb on + strand, within OHPLBJKB_00534at 547.732 kb on + strand, within OHPLBJKB_00534at 547.732 kb on + strand, within OHPLBJKB_00534at 547.732 kb on + strand, within OHPLBJKB_00534at 547.733 kb on - strand, within OHPLBJKB_00534at 547.733 kb on - strand, within OHPLBJKB_00534at 547.733 kb on - strand, within OHPLBJKB_00534at 547.733 kb on - strand, within OHPLBJKB_00534at 547.733 kb on - strand, within OHPLBJKB_00534at 547.733 kb on - strand, within OHPLBJKB_00534at 547.733 kb on - strand, within OHPLBJKB_00534at 547.733 kb on - strand, within OHPLBJKB_00534at 547.733 kb on - strand, within OHPLBJKB_00534at 547.733 kb on - strand, within OHPLBJKB_00534at 547.735 kb on - strand, within OHPLBJKB_00534at 547.788 kb on + strand, within OHPLBJKB_00534at 547.788 kb on + strand, within OHPLBJKB_00534at 547.789 kb on - strand, within OHPLBJKB_00534at 547.815 kb on + strand, within OHPLBJKB_00534at 547.816 kb on - strand, within OHPLBJKB_00534at 547.816 kb on - strand, within OHPLBJKB_00534at 547.816 kb on - strand, within OHPLBJKB_00534at 547.904 kb on + strand, within OHPLBJKB_00534at 547.916 kb on + strand, within OHPLBJKB_00534at 547.917 kb on - strand, within OHPLBJKB_00534at 547.984 kb on + strand, within OHPLBJKB_00534at 548.010 kb on + strand, within OHPLBJKB_00534at 548.010 kb on + strand, within OHPLBJKB_00534at 548.011 kb on - strand, within OHPLBJKB_00534at 548.011 kb on - strand, within OHPLBJKB_00534at 548.141 kb on - strandat 548.223 kb on + strandat 548.228 kb on + strandat 548.228 kb on + strandat 548.634 kb on + strandat 548.634 kb on + strandat 548.634 kb on + strandat 548.635 kb on - strandat 548.639 kb on + strandat 548.639 kb on + strandat 548.639 kb on + strandat 548.639 kb on + strandat 548.639 kb on + strandat 548.639 kb on + strandat 548.640 kb on - strandat 548.640 kb on - strandat 548.640 kb on - strandat 548.640 kb on - strandat 548.704 kb on + strandat 548.704 kb on + strandat 548.704 kb on + strandat 548.704 kb on + strandat 548.705 kb on - strandat 548.705 kb on - strandat 548.705 kb on - strandat 548.728 kb on - strandat 548.728 kb on - strandat 548.803 kb on + strandat 548.803 kb on + strandat 548.803 kb on + strandat 548.803 kb on + strandat 548.804 kb on - strandat 548.804 kb on - strandat 548.905 kb on + strandat 548.993 kb on + strandat 548.994 kb on - strandat 549.004 kb on + strandat 549.004 kb on + strandat 549.004 kb on + strandat 549.005 kb on - strandat 549.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LZ4
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546,596 + +1.2
546,621 + -0.2
546,621 + -0.4
546,640 + +0.6
546,748 + -1.3
547,171 + -0.4
547,197 - +0.1
547,251 + +0.0
547,263 + -0.8
547,263 + -0.4
547,264 - +0.9
547,264 - +0.9
547,299 + OHPLBJKB_00534 0.11 +0.6
547,299 + OHPLBJKB_00534 0.11 +1.0
547,299 + OHPLBJKB_00534 0.11 -0.6
547,299 + OHPLBJKB_00534 0.11 -1.5
547,299 + OHPLBJKB_00534 0.11 +0.2
547,300 - OHPLBJKB_00534 0.11 -1.6
547,300 - OHPLBJKB_00534 0.11 -1.5
547,300 - OHPLBJKB_00534 0.11 -1.0
547,300 - OHPLBJKB_00534 0.11 -0.5
547,300 - OHPLBJKB_00534 0.11 -1.4
547,300 - OHPLBJKB_00534 0.11 -0.2
547,301 + OHPLBJKB_00534 0.11 -1.3
547,301 + OHPLBJKB_00534 0.11 +1.0
547,301 + OHPLBJKB_00534 0.11 -0.1
547,301 + OHPLBJKB_00534 0.11 -0.0
547,301 + OHPLBJKB_00534 0.11 +0.6
547,301 + OHPLBJKB_00534 0.11 -0.7
547,301 + OHPLBJKB_00534 0.11 +1.0
547,301 + OHPLBJKB_00534 0.11 -0.2
547,302 - OHPLBJKB_00534 0.11 -0.2
547,302 - OHPLBJKB_00534 0.11 -0.9
547,302 - OHPLBJKB_00534 0.11 -1.0
547,303 + OHPLBJKB_00534 0.11 -1.7
547,303 + OHPLBJKB_00534 0.11 -0.7
547,303 + OHPLBJKB_00534 0.11 -0.3
547,303 + OHPLBJKB_00534 0.11 +0.9
547,303 + OHPLBJKB_00534 0.11 +0.2
547,303 + OHPLBJKB_00534 0.11 +0.2
547,303 + OHPLBJKB_00534 0.11 +0.8
547,303 + OHPLBJKB_00534 0.11 -0.9
547,303 + OHPLBJKB_00534 0.11 -1.5
547,303 + OHPLBJKB_00534 0.11 +0.7
547,304 - OHPLBJKB_00534 0.11 -0.3
547,304 - OHPLBJKB_00534 0.11 +0.8
547,304 - OHPLBJKB_00534 0.11 +0.2
547,304 - OHPLBJKB_00534 0.11 -1.0
547,304 - OHPLBJKB_00534 0.11 -1.3
547,304 - OHPLBJKB_00534 0.11 -1.0
547,304 - OHPLBJKB_00534 0.11 -0.8
547,304 - OHPLBJKB_00534 0.11 +0.3
547,304 - OHPLBJKB_00534 0.11 -0.2
547,304 - OHPLBJKB_00534 0.11 -0.8
547,304 - OHPLBJKB_00534 0.11 +1.0
547,304 - OHPLBJKB_00534 0.11 +0.3
547,304 - OHPLBJKB_00534 0.11 +0.1
547,305 + OHPLBJKB_00534 0.11 -1.4
547,305 + OHPLBJKB_00534 0.11 +0.2
547,305 + OHPLBJKB_00534 0.11 -2.3
547,305 + OHPLBJKB_00534 0.11 +1.3
547,305 + OHPLBJKB_00534 0.11 -0.4
547,306 - OHPLBJKB_00534 0.11 +0.6
547,458 + OHPLBJKB_00534 0.28 +1.6
547,459 - OHPLBJKB_00534 0.28 +0.6
547,459 - OHPLBJKB_00534 0.28 -0.8
547,588 + OHPLBJKB_00534 0.41 -0.8
547,588 + OHPLBJKB_00534 0.41 +0.2
547,589 - OHPLBJKB_00534 0.41 -0.4
547,732 + OHPLBJKB_00534 0.57 +0.5
547,732 + OHPLBJKB_00534 0.57 +0.2
547,732 + OHPLBJKB_00534 0.57 -1.1
547,732 + OHPLBJKB_00534 0.57 -0.6
547,732 + OHPLBJKB_00534 0.57 -0.8
547,732 + OHPLBJKB_00534 0.57 -1.0
547,732 + OHPLBJKB_00534 0.57 -0.3
547,732 + OHPLBJKB_00534 0.57 +0.5
547,732 + OHPLBJKB_00534 0.57 -2.3
547,732 + OHPLBJKB_00534 0.57 -0.4
547,732 + OHPLBJKB_00534 0.57 +0.4
547,732 + OHPLBJKB_00534 0.57 -0.4
547,733 - OHPLBJKB_00534 0.57 +0.8
547,733 - OHPLBJKB_00534 0.57 +0.6
547,733 - OHPLBJKB_00534 0.57 -0.2
547,733 - OHPLBJKB_00534 0.57 +1.2
547,733 - OHPLBJKB_00534 0.57 +0.0
547,733 - OHPLBJKB_00534 0.57 -0.6
547,733 - OHPLBJKB_00534 0.57 +0.5
547,733 - OHPLBJKB_00534 0.57 +0.3
547,733 - OHPLBJKB_00534 0.57 -0.0
547,733 - OHPLBJKB_00534 0.57 -1.4
547,735 - OHPLBJKB_00534 0.57 -0.4
547,788 + OHPLBJKB_00534 0.62 -0.4
547,788 + OHPLBJKB_00534 0.62 -0.2
547,789 - OHPLBJKB_00534 0.63 -0.3
547,815 + OHPLBJKB_00534 0.65 -0.3
547,816 - OHPLBJKB_00534 0.65 +0.6
547,816 - OHPLBJKB_00534 0.65 +0.4
547,816 - OHPLBJKB_00534 0.65 -0.4
547,904 + OHPLBJKB_00534 0.75 +0.1
547,916 + OHPLBJKB_00534 0.76 -0.1
547,917 - OHPLBJKB_00534 0.76 -0.3
547,984 + OHPLBJKB_00534 0.83 +0.3
548,010 + OHPLBJKB_00534 0.86 -1.1
548,010 + OHPLBJKB_00534 0.86 +0.3
548,011 - OHPLBJKB_00534 0.86 -0.3
548,011 - OHPLBJKB_00534 0.86 -1.1
548,141 - +0.6
548,223 + -1.6
548,228 + -1.0
548,228 + -0.8
548,634 + -0.3
548,634 + -0.2
548,634 + -0.1
548,635 - +0.1
548,639 + -2.0
548,639 + +0.1
548,639 + +0.1
548,639 + -1.4
548,639 + +0.5
548,639 + +0.2
548,640 - -1.0
548,640 - -0.8
548,640 - -0.9
548,640 - +0.2
548,704 + +0.2
548,704 + +0.1
548,704 + +0.6
548,704 + -0.5
548,705 - -1.4
548,705 - -2.4
548,705 - +2.0
548,728 - +0.8
548,728 - +0.6
548,803 + -0.8
548,803 + -1.0
548,803 + -0.1
548,803 + -1.4
548,804 - -0.3
548,804 - -1.3
548,905 + -0.1
548,993 + -1.4
548,994 - -0.1
549,004 + +0.5
549,004 + -0.8
549,004 + -0.2
549,005 - -1.4
549,009 - +1.1

Or see this region's nucleotide sequence