Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00182

Experiment: LZ4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00181 and OHPLBJKB_00182 are separated by 447 nucleotidesOHPLBJKB_00182 and OHPLBJKB_00183 are separated by 50 nucleotides OHPLBJKB_00181: OHPLBJKB_00181 - HTH-type transcriptional regulator DmlR, at 196,276 to 197,247 _00181 OHPLBJKB_00182: OHPLBJKB_00182 - Putative HTH-type transcriptional regulator YhjB, at 197,695 to 198,297 _00182 OHPLBJKB_00183: OHPLBJKB_00183 - Cytoplasmic trehalase, at 198,348 to 199,997 _00183 Position (kb) 197 198 199Strain fitness (log2 ratio) -1 0 1 2at 196.747 kb on + strand, within OHPLBJKB_00181at 196.776 kb on + strand, within OHPLBJKB_00181at 196.777 kb on - strand, within OHPLBJKB_00181at 196.777 kb on - strand, within OHPLBJKB_00181at 196.780 kb on + strand, within OHPLBJKB_00181at 196.894 kb on + strand, within OHPLBJKB_00181at 196.895 kb on - strand, within OHPLBJKB_00181at 196.900 kb on - strand, within OHPLBJKB_00181at 196.979 kb on + strand, within OHPLBJKB_00181at 196.980 kb on - strand, within OHPLBJKB_00181at 196.982 kb on + strand, within OHPLBJKB_00181at 196.982 kb on + strand, within OHPLBJKB_00181at 196.982 kb on + strand, within OHPLBJKB_00181at 196.982 kb on + strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 197.066 kb on - strand, within OHPLBJKB_00181at 197.352 kb on + strandat 197.390 kb on + strandat 197.475 kb on + strandat 197.475 kb on + strandat 197.476 kb on - strandat 197.476 kb on - strandat 197.476 kb on - strandat 197.478 kb on + strandat 197.491 kb on - strandat 197.491 kb on - strandat 197.517 kb on + strandat 197.548 kb on - strandat 197.558 kb on - strandat 197.574 kb on - strandat 197.674 kb on + strandat 197.675 kb on - strandat 197.675 kb on - strandat 197.702 kb on + strandat 197.730 kb on + strandat 197.731 kb on - strandat 197.764 kb on - strand, within OHPLBJKB_00182at 197.778 kb on + strand, within OHPLBJKB_00182at 197.778 kb on + strand, within OHPLBJKB_00182at 197.827 kb on + strand, within OHPLBJKB_00182at 197.840 kb on + strand, within OHPLBJKB_00182at 197.840 kb on + strand, within OHPLBJKB_00182at 197.840 kb on + strand, within OHPLBJKB_00182at 197.841 kb on - strand, within OHPLBJKB_00182at 197.841 kb on - strand, within OHPLBJKB_00182at 197.841 kb on - strand, within OHPLBJKB_00182at 197.841 kb on - strand, within OHPLBJKB_00182at 197.844 kb on + strand, within OHPLBJKB_00182at 197.844 kb on + strand, within OHPLBJKB_00182at 197.844 kb on + strand, within OHPLBJKB_00182at 197.844 kb on + strand, within OHPLBJKB_00182at 197.845 kb on - strand, within OHPLBJKB_00182at 197.979 kb on + strand, within OHPLBJKB_00182at 197.980 kb on - strand, within OHPLBJKB_00182at 198.036 kb on - strand, within OHPLBJKB_00182at 198.040 kb on - strand, within OHPLBJKB_00182at 198.102 kb on + strand, within OHPLBJKB_00182at 198.103 kb on - strand, within OHPLBJKB_00182at 198.143 kb on + strand, within OHPLBJKB_00182at 198.171 kb on + strand, within OHPLBJKB_00182at 198.172 kb on - strand, within OHPLBJKB_00182at 198.172 kb on - strand, within OHPLBJKB_00182at 198.172 kb on - strand, within OHPLBJKB_00182at 198.172 kb on - strand, within OHPLBJKB_00182at 198.196 kb on - strand, within OHPLBJKB_00182at 198.282 kb on - strandat 198.282 kb on - strandat 198.286 kb on - strandat 198.311 kb on - strandat 198.349 kb on + strandat 198.350 kb on - strandat 198.372 kb on + strandat 198.381 kb on + strandat 198.392 kb on + strandat 198.422 kb on - strandat 198.466 kb on + strandat 198.466 kb on + strandat 198.466 kb on + strandat 198.467 kb on - strandat 198.497 kb on - strandat 198.560 kb on - strand, within OHPLBJKB_00183at 198.567 kb on - strand, within OHPLBJKB_00183at 198.567 kb on - strand, within OHPLBJKB_00183at 198.591 kb on + strand, within OHPLBJKB_00183at 198.591 kb on + strand, within OHPLBJKB_00183at 198.731 kb on - strand, within OHPLBJKB_00183at 198.731 kb on - strand, within OHPLBJKB_00183at 198.796 kb on + strand, within OHPLBJKB_00183at 198.823 kb on + strand, within OHPLBJKB_00183at 198.972 kb on - strand, within OHPLBJKB_00183at 198.996 kb on - strand, within OHPLBJKB_00183at 199.047 kb on + strand, within OHPLBJKB_00183at 199.202 kb on + strand, within OHPLBJKB_00183at 199.240 kb on + strand, within OHPLBJKB_00183at 199.240 kb on + strand, within OHPLBJKB_00183at 199.241 kb on - strand, within OHPLBJKB_00183at 199.241 kb on - strand, within OHPLBJKB_00183at 199.241 kb on - strand, within OHPLBJKB_00183at 199.250 kb on + strand, within OHPLBJKB_00183at 199.251 kb on - strand, within OHPLBJKB_00183at 199.251 kb on - strand, within OHPLBJKB_00183at 199.282 kb on - strand, within OHPLBJKB_00183at 199.282 kb on - strand, within OHPLBJKB_00183at 199.282 kb on - strand, within OHPLBJKB_00183

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Per-strain Table

Position Strand Gene LocusTag Fraction LZ4
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196,747 + OHPLBJKB_00181 0.48 -0.0
196,776 + OHPLBJKB_00181 0.51 -0.5
196,777 - OHPLBJKB_00181 0.52 -0.3
196,777 - OHPLBJKB_00181 0.52 -0.1
196,780 + OHPLBJKB_00181 0.52 -0.6
196,894 + OHPLBJKB_00181 0.64 -0.7
196,895 - OHPLBJKB_00181 0.64 -0.9
196,900 - OHPLBJKB_00181 0.64 +1.2
196,979 + OHPLBJKB_00181 0.72 -0.7
196,980 - OHPLBJKB_00181 0.72 +0.1
196,982 + OHPLBJKB_00181 0.73 +1.3
196,982 + OHPLBJKB_00181 0.73 +0.3
196,982 + OHPLBJKB_00181 0.73 -1.0
196,982 + OHPLBJKB_00181 0.73 +0.2
196,983 - OHPLBJKB_00181 0.73 +0.2
196,983 - OHPLBJKB_00181 0.73 +0.4
196,983 - OHPLBJKB_00181 0.73 -0.4
196,983 - OHPLBJKB_00181 0.73 +1.4
196,983 - OHPLBJKB_00181 0.73 -0.4
196,983 - OHPLBJKB_00181 0.73 -0.6
197,066 - OHPLBJKB_00181 0.81 +0.4
197,352 + -0.5
197,390 + -0.7
197,475 + +0.6
197,475 + +2.4
197,476 - -1.0
197,476 - -0.8
197,476 - -0.4
197,478 + -0.9
197,491 - +1.1
197,491 - +0.9
197,517 + +1.5
197,548 - -0.3
197,558 - -0.8
197,574 - -0.2
197,674 + -0.6
197,675 - -0.5
197,675 - -0.1
197,702 + +0.3
197,730 + -0.4
197,731 - +0.6
197,764 - OHPLBJKB_00182 0.11 +0.4
197,778 + OHPLBJKB_00182 0.14 +0.8
197,778 + OHPLBJKB_00182 0.14 -1.3
197,827 + OHPLBJKB_00182 0.22 +1.7
197,840 + OHPLBJKB_00182 0.24 +0.7
197,840 + OHPLBJKB_00182 0.24 -1.0
197,840 + OHPLBJKB_00182 0.24 +0.5
197,841 - OHPLBJKB_00182 0.24 -0.3
197,841 - OHPLBJKB_00182 0.24 -0.1
197,841 - OHPLBJKB_00182 0.24 -0.5
197,841 - OHPLBJKB_00182 0.24 -1.3
197,844 + OHPLBJKB_00182 0.25 -0.1
197,844 + OHPLBJKB_00182 0.25 +0.4
197,844 + OHPLBJKB_00182 0.25 +0.7
197,844 + OHPLBJKB_00182 0.25 -0.0
197,845 - OHPLBJKB_00182 0.25 -0.4
197,979 + OHPLBJKB_00182 0.47 +0.2
197,980 - OHPLBJKB_00182 0.47 -0.5
198,036 - OHPLBJKB_00182 0.57 -0.5
198,040 - OHPLBJKB_00182 0.57 -0.2
198,102 + OHPLBJKB_00182 0.67 -0.1
198,103 - OHPLBJKB_00182 0.68 +0.4
198,143 + OHPLBJKB_00182 0.74 -0.9
198,171 + OHPLBJKB_00182 0.79 -0.5
198,172 - OHPLBJKB_00182 0.79 +0.4
198,172 - OHPLBJKB_00182 0.79 +0.3
198,172 - OHPLBJKB_00182 0.79 +1.2
198,172 - OHPLBJKB_00182 0.79 -0.1
198,196 - OHPLBJKB_00182 0.83 -0.3
198,282 - +0.4
198,282 - +1.1
198,286 - +0.7
198,311 - +0.8
198,349 + +0.1
198,350 - -0.5
198,372 + -0.3
198,381 + -1.2
198,392 + -0.5
198,422 - -0.3
198,466 + -0.9
198,466 + -0.3
198,466 + +1.1
198,467 - -0.6
198,497 - -0.2
198,560 - OHPLBJKB_00183 0.13 +0.1
198,567 - OHPLBJKB_00183 0.13 -0.4
198,567 - OHPLBJKB_00183 0.13 -0.7
198,591 + OHPLBJKB_00183 0.15 -1.1
198,591 + OHPLBJKB_00183 0.15 +1.7
198,731 - OHPLBJKB_00183 0.23 -0.4
198,731 - OHPLBJKB_00183 0.23 -1.2
198,796 + OHPLBJKB_00183 0.27 +0.7
198,823 + OHPLBJKB_00183 0.29 -0.6
198,972 - OHPLBJKB_00183 0.38 -0.7
198,996 - OHPLBJKB_00183 0.39 -0.9
199,047 + OHPLBJKB_00183 0.42 -1.0
199,202 + OHPLBJKB_00183 0.52 +0.5
199,240 + OHPLBJKB_00183 0.54 -0.1
199,240 + OHPLBJKB_00183 0.54 +0.4
199,241 - OHPLBJKB_00183 0.54 -0.8
199,241 - OHPLBJKB_00183 0.54 -0.1
199,241 - OHPLBJKB_00183 0.54 +1.2
199,250 + OHPLBJKB_00183 0.55 +0.3
199,251 - OHPLBJKB_00183 0.55 -0.9
199,251 - OHPLBJKB_00183 0.55 -0.3
199,282 - OHPLBJKB_00183 0.57 +0.3
199,282 - OHPLBJKB_00183 0.57 -1.5
199,282 - OHPLBJKB_00183 0.57 +0.6

Or see this region's nucleotide sequence