Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00107

Experiment: LZ4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00106 and OHPLBJKB_00107 are separated by 11 nucleotidesOHPLBJKB_00107 and OHPLBJKB_00108 are separated by 47 nucleotidesOHPLBJKB_00108 and OHPLBJKB_00109 are separated by 20 nucleotides OHPLBJKB_00106: OHPLBJKB_00106 - hypothetical protein, at 115,732 to 116,193 _00106 OHPLBJKB_00107: OHPLBJKB_00107 - hypothetical protein, at 116,205 to 117,143 _00107 OHPLBJKB_00108: OHPLBJKB_00108 - Protein YibA, at 117,191 to 118,033 _00108 OHPLBJKB_00109: OHPLBJKB_00109 - hypothetical protein, at 118,054 to 119,142 _00109 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1at 115.258 kb on + strandat 115.367 kb on - strandat 115.394 kb on - strandat 115.489 kb on - strandat 115.633 kb on - strandat 115.667 kb on + strandat 115.667 kb on + strandat 115.671 kb on + strandat 115.671 kb on + strandat 115.673 kb on + strandat 115.673 kb on + strandat 115.674 kb on - strandat 115.674 kb on - strandat 115.676 kb on + strandat 115.677 kb on - strandat 115.677 kb on - strandat 115.697 kb on + strandat 115.697 kb on + strandat 115.697 kb on + strandat 115.698 kb on - strandat 115.701 kb on - strandat 115.701 kb on - strandat 115.725 kb on - strandat 116.003 kb on + strand, within OHPLBJKB_00106at 116.206 kb on + strandat 116.243 kb on + strandat 116.307 kb on - strand, within OHPLBJKB_00107at 116.307 kb on - strand, within OHPLBJKB_00107at 116.372 kb on + strand, within OHPLBJKB_00107at 116.372 kb on + strand, within OHPLBJKB_00107at 116.430 kb on - strand, within OHPLBJKB_00107at 116.542 kb on + strand, within OHPLBJKB_00107at 116.548 kb on - strand, within OHPLBJKB_00107at 116.589 kb on - strand, within OHPLBJKB_00107at 116.634 kb on - strand, within OHPLBJKB_00107at 116.636 kb on + strand, within OHPLBJKB_00107at 116.649 kb on + strand, within OHPLBJKB_00107at 116.661 kb on - strand, within OHPLBJKB_00107at 116.686 kb on - strand, within OHPLBJKB_00107at 116.709 kb on + strand, within OHPLBJKB_00107at 116.715 kb on + strand, within OHPLBJKB_00107at 116.741 kb on - strand, within OHPLBJKB_00107at 116.848 kb on + strand, within OHPLBJKB_00107at 116.926 kb on + strand, within OHPLBJKB_00107at 116.926 kb on + strand, within OHPLBJKB_00107at 117.179 kb on - strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.257 kb on - strandat 117.259 kb on + strandat 117.259 kb on + strandat 117.263 kb on + strandat 117.263 kb on + strandat 117.472 kb on - strand, within OHPLBJKB_00108at 117.608 kb on - strand, within OHPLBJKB_00108

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Per-strain Table

Position Strand Gene LocusTag Fraction LZ4
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115,258 + +0.5
115,367 - -0.2
115,394 - +0.2
115,489 - -0.4
115,633 - -0.3
115,667 + -0.3
115,667 + -0.2
115,671 + +0.5
115,671 + +0.6
115,673 + -0.2
115,673 + -0.9
115,674 - +0.3
115,674 - -0.4
115,676 + +0.7
115,677 - -0.1
115,677 - -0.5
115,697 + +0.1
115,697 + -0.1
115,697 + -1.6
115,698 - +0.8
115,701 - +1.7
115,701 - -0.2
115,725 - +0.7
116,003 + OHPLBJKB_00106 0.59 -0.8
116,206 + +0.1
116,243 + -0.6
116,307 - OHPLBJKB_00107 0.11 +0.4
116,307 - OHPLBJKB_00107 0.11 +0.2
116,372 + OHPLBJKB_00107 0.18 +0.2
116,372 + OHPLBJKB_00107 0.18 +1.1
116,430 - OHPLBJKB_00107 0.24 -0.5
116,542 + OHPLBJKB_00107 0.36 -1.0
116,548 - OHPLBJKB_00107 0.37 -1.3
116,589 - OHPLBJKB_00107 0.41 -0.7
116,634 - OHPLBJKB_00107 0.46 +0.7
116,636 + OHPLBJKB_00107 0.46 -0.5
116,649 + OHPLBJKB_00107 0.47 -0.1
116,661 - OHPLBJKB_00107 0.49 -0.7
116,686 - OHPLBJKB_00107 0.51 -0.2
116,709 + OHPLBJKB_00107 0.54 -0.3
116,715 + OHPLBJKB_00107 0.54 +0.1
116,741 - OHPLBJKB_00107 0.57 -0.3
116,848 + OHPLBJKB_00107 0.68 -0.2
116,926 + OHPLBJKB_00107 0.77 -0.9
116,926 + OHPLBJKB_00107 0.77 +0.5
117,179 - +0.1
117,256 + -0.1
117,256 + -0.1
117,256 + -0.7
117,256 + -1.5
117,256 + -0.9
117,257 - -1.0
117,259 + -0.4
117,259 + -1.0
117,263 + +1.1
117,263 + -0.3
117,472 - OHPLBJKB_00108 0.33 -2.0
117,608 - OHPLBJKB_00108 0.49 +0.5

Or see this region's nucleotide sequence