Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF911 and GFF912 are separated by 60 nucleotides GFF912 and GFF913 overlap by 1 nucleotides
GFF911 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 642,206 to 643,363
GFF911
GFF912 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 643,424 to 644,593
GFF912
GFF913 - Immune-responsive protein 1, at 644,593 to 646,017
GFF913
Position (kb) 643
644
645 Strain fitness (log2 ratio) -1
0
1
2 at 642.541 kb on + strand, within GFF911 at 642.542 kb on - strand, within GFF911 at 642.588 kb on + strand, within GFF911 at 642.588 kb on + strand, within GFF911 at 642.729 kb on - strand, within GFF911 at 642.729 kb on - strand, within GFF911 at 642.844 kb on - strand, within GFF911 at 642.844 kb on - strand, within GFF911 at 642.844 kb on - strand, within GFF911 at 642.872 kb on + strand, within GFF911 at 642.872 kb on + strand, within GFF911 at 642.873 kb on - strand, within GFF911 at 642.873 kb on - strand, within GFF911 at 642.971 kb on - strand, within GFF911 at 642.971 kb on - strand, within GFF911 at 643.008 kb on + strand, within GFF911 at 643.008 kb on + strand, within GFF911 at 643.008 kb on + strand, within GFF911 at 643.009 kb on - strand, within GFF911 at 643.009 kb on - strand, within GFF911 at 643.158 kb on + strand, within GFF911 at 643.158 kb on + strand, within GFF911 at 643.158 kb on + strand, within GFF911 at 643.159 kb on - strand, within GFF911 at 643.159 kb on - strand, within GFF911 at 643.518 kb on + strand at 643.522 kb on - strand at 643.549 kb on - strand, within GFF912 at 643.554 kb on + strand, within GFF912 at 643.660 kb on - strand, within GFF912 at 643.660 kb on - strand, within GFF912 at 643.785 kb on + strand, within GFF912 at 643.969 kb on - strand, within GFF912 at 644.140 kb on - strand, within GFF912 at 644.140 kb on - strand, within GFF912 at 644.140 kb on - strand, within GFF912 at 644.374 kb on - strand, within GFF912 at 644.587 kb on + strand at 644.595 kb on - strand at 644.716 kb on + strand at 644.717 kb on - strand at 645.279 kb on - strand, within GFF913 at 645.299 kb on + strand, within GFF913 at 645.299 kb on + strand, within GFF913 at 645.299 kb on + strand, within GFF913 at 645.300 kb on - strand, within GFF913 at 645.421 kb on - strand, within GFF913
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 642,541 + GFF911 0.29 +1.0 642,542 - GFF911 0.29 +0.4 642,588 + GFF911 0.33 +0.7 642,588 + GFF911 0.33 +0.1 642,729 - GFF911 0.45 +0.3 642,729 - GFF911 0.45 -0.9 642,844 - GFF911 0.55 +0.0 642,844 - GFF911 0.55 -0.4 642,844 - GFF911 0.55 +0.1 642,872 + GFF911 0.58 -0.2 642,872 + GFF911 0.58 -0.8 642,873 - GFF911 0.58 +2.0 642,873 - GFF911 0.58 +0.7 642,971 - GFF911 0.66 +0.1 642,971 - GFF911 0.66 -0.2 643,008 + GFF911 0.69 -0.3 643,008 + GFF911 0.69 +1.0 643,008 + GFF911 0.69 -1.6 643,009 - GFF911 0.69 +0.2 643,009 - GFF911 0.69 +0.7 643,158 + GFF911 0.82 +0.3 643,158 + GFF911 0.82 -1.3 643,158 + GFF911 0.82 -1.0 643,159 - GFF911 0.82 +0.5 643,159 - GFF911 0.82 +0.9 643,518 + +1.1 643,522 - -1.6 643,549 - GFF912 0.11 +0.1 643,554 + GFF912 0.11 -0.0 643,660 - GFF912 0.20 -0.4 643,660 - GFF912 0.20 +0.8 643,785 + GFF912 0.31 +0.6 643,969 - GFF912 0.47 -0.0 644,140 - GFF912 0.61 +1.2 644,140 - GFF912 0.61 +0.0 644,140 - GFF912 0.61 +0.5 644,374 - GFF912 0.81 +0.4 644,587 + +0.0 644,595 - -1.0 644,716 + -0.1 644,717 - +0.5 645,279 - GFF913 0.48 -0.7 645,299 + GFF913 0.50 +0.4 645,299 + GFF913 0.50 +0.6 645,299 + GFF913 0.50 +2.5 645,300 - GFF913 0.50 +0.0 645,421 - GFF913 0.58 -1.2
Or see this region's nucleotide sequence