Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF882 and GFF883 are separated by 14 nucleotides GFF883 and GFF884 overlap by 4 nucleotides
GFF882 - Enoyl-CoA hydratase (EC 4.2.1.17), at 608,301 to 609,089
GFF882
GFF883 - CAIB/BAIF family protein, at 609,104 to 610,327
GFF883
GFF884 - Acetoacetyl-CoA synthetase (EC 6.2.1.16), at 610,324 to 612,306
GFF884
Position (kb) 609
610
611 Strain fitness (log2 ratio) -2
-1
0
1 at 608.176 kb on + strand at 608.177 kb on - strand at 608.177 kb on - strand at 608.177 kb on - strand at 608.199 kb on - strand at 608.715 kb on + strand, within GFF882 at 608.715 kb on + strand, within GFF882 at 608.716 kb on - strand, within GFF882 at 608.716 kb on - strand, within GFF882 at 608.717 kb on + strand, within GFF882 at 608.717 kb on + strand, within GFF882 at 608.718 kb on - strand, within GFF882 at 608.852 kb on - strand, within GFF882 at 608.892 kb on + strand, within GFF882 at 608.898 kb on - strand, within GFF882 at 608.898 kb on - strand, within GFF882 at 608.898 kb on - strand, within GFF882 at 608.958 kb on + strand, within GFF882 at 609.087 kb on + strand at 609.088 kb on - strand at 609.088 kb on - strand at 609.165 kb on - strand at 609.258 kb on - strand, within GFF883 at 609.258 kb on - strand, within GFF883 at 609.321 kb on + strand, within GFF883 at 609.321 kb on + strand, within GFF883 at 609.321 kb on + strand, within GFF883 at 609.321 kb on + strand, within GFF883 at 609.321 kb on + strand, within GFF883 at 609.322 kb on - strand, within GFF883 at 609.322 kb on - strand, within GFF883 at 609.322 kb on - strand, within GFF883 at 609.461 kb on + strand, within GFF883 at 609.461 kb on + strand, within GFF883 at 609.464 kb on + strand, within GFF883 at 609.465 kb on - strand, within GFF883 at 609.551 kb on + strand, within GFF883 at 609.551 kb on + strand, within GFF883 at 609.743 kb on + strand, within GFF883 at 609.743 kb on + strand, within GFF883 at 609.744 kb on - strand, within GFF883 at 610.030 kb on + strand, within GFF883 at 610.128 kb on + strand, within GFF883 at 610.207 kb on + strand at 610.208 kb on - strand at 610.235 kb on + strand at 610.441 kb on + strand at 610.504 kb on + strand at 610.597 kb on + strand, within GFF884 at 610.597 kb on + strand, within GFF884 at 610.597 kb on + strand, within GFF884 at 610.598 kb on - strand, within GFF884 at 610.768 kb on + strand, within GFF884 at 610.923 kb on - strand, within GFF884 at 611.137 kb on + strand, within GFF884 at 611.138 kb on - strand, within GFF884
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 608,176 + +1.4 608,177 - -0.2 608,177 - +0.2 608,177 - -0.3 608,199 - -1.0 608,715 + GFF882 0.52 -1.2 608,715 + GFF882 0.52 +0.5 608,716 - GFF882 0.53 -0.5 608,716 - GFF882 0.53 -2.2 608,717 + GFF882 0.53 +0.2 608,717 + GFF882 0.53 -0.3 608,718 - GFF882 0.53 +0.4 608,852 - GFF882 0.70 +0.1 608,892 + GFF882 0.75 +1.0 608,898 - GFF882 0.76 -0.3 608,898 - GFF882 0.76 -0.7 608,898 - GFF882 0.76 -0.4 608,958 + GFF882 0.83 +0.6 609,087 + +0.1 609,088 - +1.4 609,088 - +1.5 609,165 - +0.7 609,258 - GFF883 0.13 -0.0 609,258 - GFF883 0.13 +1.0 609,321 + GFF883 0.18 +0.2 609,321 + GFF883 0.18 +0.7 609,321 + GFF883 0.18 -0.4 609,321 + GFF883 0.18 -0.3 609,321 + GFF883 0.18 -0.8 609,322 - GFF883 0.18 -0.1 609,322 - GFF883 0.18 -0.9 609,322 - GFF883 0.18 +0.4 609,461 + GFF883 0.29 -1.9 609,461 + GFF883 0.29 -0.3 609,464 + GFF883 0.29 -1.4 609,465 - GFF883 0.29 +0.6 609,551 + GFF883 0.37 -0.6 609,551 + GFF883 0.37 -0.1 609,743 + GFF883 0.52 -0.5 609,743 + GFF883 0.52 +0.6 609,744 - GFF883 0.52 +0.5 610,030 + GFF883 0.76 -0.2 610,128 + GFF883 0.84 +0.4 610,207 + +0.1 610,208 - -0.6 610,235 + -0.8 610,441 + -0.3 610,504 + +1.6 610,597 + GFF884 0.14 -0.3 610,597 + GFF884 0.14 -0.1 610,597 + GFF884 0.14 +0.6 610,598 - GFF884 0.14 -0.1 610,768 + GFF884 0.22 -0.4 610,923 - GFF884 0.30 +0.2 611,137 + GFF884 0.41 +0.2 611,138 - GFF884 0.41 +0.2
Or see this region's nucleotide sequence