Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF85

Experiment: Ying_sugar7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF83 and GFF84 overlap by 14 nucleotidesGFF84 and GFF85 overlap by 1 nucleotidesGFF85 and GFF86 are separated by 14 nucleotidesGFF86 and GFF87 are separated by 1 nucleotides GFF83 - Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, at 92,370 to 93,929 GFF83 GFF84 - FOG: Ankyrin repeat, at 93,916 to 94,773 GFF84 GFF85 - Uncharacterized archaeal coiled-coil protein, at 94,773 to 95,426 GFF85 GFF86 - hypothetical protein, at 95,441 to 96,262 GFF86 GFF87 - hypothetical protein, at 96,264 to 97,442 GFF87 Position (kb) 94 95 96Strain fitness (log2 ratio) -1 0 1at 93.910 kb on - strandat 93.910 kb on - strandat 94.652 kb on - strand, within GFF84at 95.250 kb on + strand, within GFF85at 95.633 kb on + strand, within GFF86at 95.936 kb on + strand, within GFF86at 95.936 kb on + strand, within GFF86

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
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93,910 - -0.0
93,910 - +0.9
94,652 - GFF84 0.86 +0.7
95,250 + GFF85 0.73 +0.2
95,633 + GFF86 0.23 +0.5
95,936 + GFF86 0.60 +1.1
95,936 + GFF86 0.60 +0.4

Or see this region's nucleotide sequence