Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF838 and GFF839 overlap by 8 nucleotides GFF839 and GFF840 are separated by 859 nucleotides GFF840 and GFF841 are separated by 114 nucleotides GFF841 and GFF842 overlap by 8 nucleotides
GFF838 - hypothetical protein, at 539,998 to 540,234
GFF838
GFF839 - hypothetical protein, at 540,227 to 540,355
GFF839
GFF840 - FIG149030: hypothetical protein, at 541,215 to 542,705
GFF840
GFF841 - FIG039767: hypothetical protein, at 542,820 to 543,431
GFF841
GFF842 - FIG007317: Chromosome segregation protein SMC-like, at 543,424 to 546,846
GFF842
Position (kb) 541
542
543 Strain fitness (log2 ratio) -2
-1
0
1
2 at 540.221 kb on + strand at 540.222 kb on - strand at 540.499 kb on - strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.658 kb on - strand at 540.658 kb on - strand at 540.658 kb on - strand at 540.658 kb on - strand at 540.658 kb on - strand at 540.823 kb on + strand at 540.823 kb on + strand at 540.824 kb on - strand at 540.872 kb on + strand at 540.873 kb on - strand at 540.873 kb on - strand at 540.873 kb on - strand at 541.125 kb on - strand at 541.416 kb on + strand, within GFF840 at 541.416 kb on + strand, within GFF840 at 541.417 kb on - strand, within GFF840 at 541.417 kb on - strand, within GFF840 at 541.485 kb on + strand, within GFF840 at 541.485 kb on + strand, within GFF840 at 541.485 kb on + strand, within GFF840 at 541.486 kb on - strand, within GFF840 at 541.486 kb on - strand, within GFF840 at 542.021 kb on - strand, within GFF840 at 542.021 kb on - strand, within GFF840 at 542.529 kb on + strand, within GFF840 at 542.529 kb on + strand, within GFF840 at 542.530 kb on - strand, within GFF840 at 543.004 kb on + strand, within GFF841 at 543.005 kb on - strand, within GFF841 at 543.127 kb on + strand, within GFF841 at 543.128 kb on - strand, within GFF841 at 543.128 kb on - strand, within GFF841 at 543.128 kb on - strand, within GFF841 at 543.292 kb on - strand, within GFF841 at 543.649 kb on + strand at 543.649 kb on + strand at 543.649 kb on + strand at 543.649 kb on + strand at 543.649 kb on + strand at 543.650 kb on - strand at 543.650 kb on - strand at 543.698 kb on - strand at 543.698 kb on - strand at 543.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 540,221 + -0.3 540,222 - -0.3 540,499 - -0.2 540,657 + +0.3 540,657 + +0.0 540,657 + -0.0 540,657 + +0.7 540,657 + -0.6 540,658 - -2.3 540,658 - -0.2 540,658 - -0.5 540,658 - -0.8 540,658 - +0.2 540,823 + +0.2 540,823 + +0.1 540,824 - -0.6 540,872 + +0.5 540,873 - -0.3 540,873 - +0.6 540,873 - +0.5 541,125 - +2.0 541,416 + GFF840 0.13 -0.0 541,416 + GFF840 0.13 +2.0 541,417 - GFF840 0.14 +0.6 541,417 - GFF840 0.14 +0.3 541,485 + GFF840 0.18 -1.1 541,485 + GFF840 0.18 +0.0 541,485 + GFF840 0.18 +0.3 541,486 - GFF840 0.18 -0.2 541,486 - GFF840 0.18 -0.4 542,021 - GFF840 0.54 +0.6 542,021 - GFF840 0.54 +0.4 542,529 + GFF840 0.88 +1.1 542,529 + GFF840 0.88 +0.0 542,530 - GFF840 0.88 -0.0 543,004 + GFF841 0.30 +0.6 543,005 - GFF841 0.30 +0.0 543,127 + GFF841 0.50 +0.1 543,128 - GFF841 0.50 -1.0 543,128 - GFF841 0.50 +0.1 543,128 - GFF841 0.50 +2.6 543,292 - GFF841 0.77 +1.0 543,649 + -0.3 543,649 + -0.0 543,649 + -0.1 543,649 + -0.2 543,649 + +0.2 543,650 - -0.3 543,650 - -0.7 543,698 - -1.2 543,698 - +0.2 543,698 - -0.8
Or see this region's nucleotide sequence