Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF797 and GFF798 are separated by 52 nucleotides GFF798 and GFF799 are separated by 19 nucleotides GFF799 and GFF800 are separated by 135 nucleotides GFF800 and GFF801 overlap by 4 nucleotides
GFF797 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 492,612 to 493,580
GFF797
GFF798 - Gluconolactonase (EC 3.1.1.17), at 493,633 to 494,535
GFF798
GFF799 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 494,555 to 495,406
GFF799
GFF800 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 495,542 to 496,279
GFF800
GFF801 - Permease of the drug/metabolite transporter (DMT) superfamily, at 496,276 to 497,244
GFF801
Position (kb) 494
495
496 Strain fitness (log2 ratio) -1
0
1
2 at 493.836 kb on + strand, within GFF798 at 493.963 kb on - strand, within GFF798 at 494.027 kb on + strand, within GFF798 at 494.027 kb on + strand, within GFF798 at 494.027 kb on + strand, within GFF798 at 494.028 kb on - strand, within GFF798 at 494.028 kb on - strand, within GFF798 at 494.117 kb on + strand, within GFF798 at 494.117 kb on + strand, within GFF798 at 494.118 kb on - strand, within GFF798 at 494.150 kb on + strand, within GFF798 at 494.595 kb on + strand at 494.596 kb on - strand at 494.682 kb on + strand, within GFF799 at 494.905 kb on - strand, within GFF799 at 494.905 kb on - strand, within GFF799 at 494.946 kb on + strand, within GFF799 at 494.947 kb on - strand, within GFF799 at 495.000 kb on + strand, within GFF799 at 495.001 kb on - strand, within GFF799 at 495.001 kb on - strand, within GFF799 at 495.001 kb on - strand, within GFF799 at 495.069 kb on + strand, within GFF799 at 495.069 kb on + strand, within GFF799 at 495.070 kb on - strand, within GFF799 at 495.418 kb on + strand at 495.419 kb on - strand at 495.419 kb on - strand at 495.528 kb on + strand at 496.061 kb on + strand, within GFF800 at 496.061 kb on + strand, within GFF800 at 496.061 kb on + strand, within GFF800 at 496.061 kb on + strand, within GFF800 at 496.062 kb on - strand, within GFF800 at 496.062 kb on - strand, within GFF800 at 496.062 kb on - strand, within GFF800 at 496.133 kb on + strand, within GFF800 at 496.133 kb on + strand, within GFF800 at 496.169 kb on + strand, within GFF800 at 496.169 kb on + strand, within GFF800 at 496.170 kb on - strand, within GFF800 at 496.170 kb on - strand, within GFF800 at 496.170 kb on - strand, within GFF800 at 496.390 kb on + strand, within GFF801 at 496.391 kb on - strand, within GFF801
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 493,836 + GFF798 0.22 +0.7 493,963 - GFF798 0.37 +1.6 494,027 + GFF798 0.44 -0.3 494,027 + GFF798 0.44 -0.0 494,027 + GFF798 0.44 +0.4 494,028 - GFF798 0.44 +0.8 494,028 - GFF798 0.44 +0.4 494,117 + GFF798 0.54 +0.1 494,117 + GFF798 0.54 -0.0 494,118 - GFF798 0.54 +0.2 494,150 + GFF798 0.57 -0.9 494,595 + +1.2 494,596 - +0.4 494,682 + GFF799 0.15 -0.2 494,905 - GFF799 0.41 -0.2 494,905 - GFF799 0.41 +0.6 494,946 + GFF799 0.46 +1.9 494,947 - GFF799 0.46 -0.7 495,000 + GFF799 0.52 +0.9 495,001 - GFF799 0.52 -0.2 495,001 - GFF799 0.52 +1.3 495,001 - GFF799 0.52 -0.6 495,069 + GFF799 0.60 +0.2 495,069 + GFF799 0.60 +1.0 495,070 - GFF799 0.60 +0.6 495,418 + +0.2 495,419 - -0.1 495,419 - -0.9 495,528 + -0.9 496,061 + GFF800 0.70 +0.1 496,061 + GFF800 0.70 +0.3 496,061 + GFF800 0.70 -0.8 496,061 + GFF800 0.70 -0.8 496,062 - GFF800 0.70 +0.7 496,062 - GFF800 0.70 -0.8 496,062 - GFF800 0.70 +1.0 496,133 + GFF800 0.80 -0.6 496,133 + GFF800 0.80 -1.1 496,169 + GFF800 0.85 -0.6 496,169 + GFF800 0.85 -0.9 496,170 - GFF800 0.85 -0.6 496,170 - GFF800 0.85 -0.4 496,170 - GFF800 0.85 -0.1 496,390 + GFF801 0.12 +0.4 496,391 - GFF801 0.12 +1.3
Or see this region's nucleotide sequence