Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF673

Experiment: Ying_sugar7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF672 and GFF673 are separated by 18 nucleotidesGFF673 and GFF674 are separated by 10 nucleotidesGFF674 and GFF675 are separated by 7 nucleotides GFF672 - carbon monoxide dehydrogenase E protein, at 358,061 to 359,248 GFF672 GFF673 - GCN5-related N-acetyltransferase, at 359,267 to 359,860 GFF673 GFF674 - hypothetical protein, at 359,871 to 360,107 GFF674 GFF675 - ATPase associated with various cellular activities, AAA_5, at 360,115 to 360,957 GFF675 Position (kb) 359 360Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 358.286 kb on + strand, within GFF672at 358.332 kb on + strand, within GFF672at 358.333 kb on - strand, within GFF672at 358.344 kb on + strand, within GFF672at 358.344 kb on + strand, within GFF672at 358.345 kb on - strand, within GFF672at 358.417 kb on - strand, within GFF672at 358.434 kb on + strand, within GFF672at 358.434 kb on + strand, within GFF672at 358.435 kb on - strand, within GFF672at 358.435 kb on - strand, within GFF672at 358.437 kb on + strand, within GFF672at 358.720 kb on - strand, within GFF672at 358.720 kb on - strand, within GFF672at 359.038 kb on - strand, within GFF672at 359.068 kb on - strand, within GFF672at 359.068 kb on - strand, within GFF672at 359.109 kb on + strand, within GFF672at 359.109 kb on + strand, within GFF672at 359.109 kb on + strand, within GFF672at 359.109 kb on + strand, within GFF672at 359.109 kb on + strand, within GFF672at 359.110 kb on - strand, within GFF672at 359.188 kb on - strandat 359.229 kb on + strandat 359.229 kb on + strandat 359.229 kb on + strandat 359.289 kb on + strandat 359.289 kb on + strandat 359.289 kb on + strandat 359.337 kb on + strand, within GFF673at 359.337 kb on + strand, within GFF673at 359.337 kb on + strand, within GFF673at 359.337 kb on + strand, within GFF673at 359.338 kb on - strand, within GFF673at 359.338 kb on - strand, within GFF673at 359.445 kb on + strand, within GFF673at 359.445 kb on + strand, within GFF673at 359.446 kb on - strand, within GFF673at 359.446 kb on - strand, within GFF673at 359.446 kb on - strand, within GFF673at 359.446 kb on - strand, within GFF673at 359.556 kb on + strand, within GFF673at 359.565 kb on + strand, within GFF673at 359.566 kb on - strand, within GFF673at 359.608 kb on - strand, within GFF673at 359.608 kb on - strand, within GFF673at 359.608 kb on - strand, within GFF673at 359.608 kb on - strand, within GFF673at 359.703 kb on + strand, within GFF673at 360.332 kb on + strand, within GFF675at 360.332 kb on + strand, within GFF675at 360.333 kb on - strand, within GFF675at 360.333 kb on - strand, within GFF675at 360.431 kb on + strand, within GFF675at 360.431 kb on + strand, within GFF675at 360.432 kb on - strand, within GFF675at 360.432 kb on - strand, within GFF675at 360.539 kb on + strand, within GFF675at 360.539 kb on + strand, within GFF675at 360.539 kb on + strand, within GFF675at 360.539 kb on + strand, within GFF675at 360.540 kb on - strand, within GFF675at 360.540 kb on - strand, within GFF675at 360.540 kb on - strand, within GFF675at 360.540 kb on - strand, within GFF675at 360.540 kb on - strand, within GFF675at 360.545 kb on + strand, within GFF675at 360.545 kb on + strand, within GFF675at 360.545 kb on + strand, within GFF675at 360.545 kb on + strand, within GFF675at 360.545 kb on + strand, within GFF675at 360.546 kb on - strand, within GFF675at 360.546 kb on - strand, within GFF675at 360.546 kb on - strand, within GFF675at 360.546 kb on - strand, within GFF675at 360.546 kb on - strand, within GFF675at 360.546 kb on - strand, within GFF675at 360.677 kb on + strand, within GFF675at 360.677 kb on + strand, within GFF675at 360.677 kb on + strand, within GFF675at 360.677 kb on + strand, within GFF675at 360.677 kb on + strand, within GFF675at 360.677 kb on + strand, within GFF675at 360.677 kb on + strand, within GFF675at 360.677 kb on + strand, within GFF675at 360.678 kb on - strand, within GFF675at 360.743 kb on + strand, within GFF675at 360.749 kb on + strand, within GFF675at 360.749 kb on + strand, within GFF675at 360.750 kb on - strand, within GFF675at 360.750 kb on - strand, within GFF675at 360.750 kb on - strand, within GFF675

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
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358,286 + GFF672 0.19 +0.1
358,332 + GFF672 0.23 -0.7
358,333 - GFF672 0.23 +0.7
358,344 + GFF672 0.24 +0.4
358,344 + GFF672 0.24 -1.1
358,345 - GFF672 0.24 +0.0
358,417 - GFF672 0.30 -0.3
358,434 + GFF672 0.31 -0.1
358,434 + GFF672 0.31 +0.5
358,435 - GFF672 0.31 +0.3
358,435 - GFF672 0.31 +1.3
358,437 + GFF672 0.32 +0.2
358,720 - GFF672 0.55 +0.8
358,720 - GFF672 0.55 +0.5
359,038 - GFF672 0.82 +0.0
359,068 - GFF672 0.85 -0.3
359,068 - GFF672 0.85 +0.2
359,109 + GFF672 0.88 +0.4
359,109 + GFF672 0.88 +0.2
359,109 + GFF672 0.88 -1.2
359,109 + GFF672 0.88 -0.8
359,109 + GFF672 0.88 +0.2
359,110 - GFF672 0.88 -0.0
359,188 - +0.3
359,229 + +1.2
359,229 + -0.1
359,229 + +1.0
359,289 + -0.0
359,289 + +1.4
359,289 + +1.2
359,337 + GFF673 0.12 +1.0
359,337 + GFF673 0.12 -0.7
359,337 + GFF673 0.12 -0.0
359,337 + GFF673 0.12 +0.6
359,338 - GFF673 0.12 +1.2
359,338 - GFF673 0.12 +0.1
359,445 + GFF673 0.30 +0.2
359,445 + GFF673 0.30 +0.4
359,446 - GFF673 0.30 +0.7
359,446 - GFF673 0.30 +0.1
359,446 - GFF673 0.30 -0.1
359,446 - GFF673 0.30 -1.3
359,556 + GFF673 0.49 -1.0
359,565 + GFF673 0.50 -0.0
359,566 - GFF673 0.50 +0.2
359,608 - GFF673 0.57 -0.6
359,608 - GFF673 0.57 -1.8
359,608 - GFF673 0.57 -0.1
359,608 - GFF673 0.57 +0.5
359,703 + GFF673 0.73 +0.5
360,332 + GFF675 0.26 -1.0
360,332 + GFF675 0.26 -0.3
360,333 - GFF675 0.26 +0.5
360,333 - GFF675 0.26 -0.6
360,431 + GFF675 0.37 +1.7
360,431 + GFF675 0.37 -0.3
360,432 - GFF675 0.38 +1.0
360,432 - GFF675 0.38 -0.4
360,539 + GFF675 0.50 +0.7
360,539 + GFF675 0.50 -0.6
360,539 + GFF675 0.50 +0.3
360,539 + GFF675 0.50 +0.8
360,540 - GFF675 0.50 +1.2
360,540 - GFF675 0.50 -1.2
360,540 - GFF675 0.50 +0.3
360,540 - GFF675 0.50 -1.4
360,540 - GFF675 0.50 -1.7
360,545 + GFF675 0.51 -0.8
360,545 + GFF675 0.51 +1.4
360,545 + GFF675 0.51 -3.9
360,545 + GFF675 0.51 +1.0
360,545 + GFF675 0.51 +2.0
360,546 - GFF675 0.51 -0.6
360,546 - GFF675 0.51 -0.0
360,546 - GFF675 0.51 -0.1
360,546 - GFF675 0.51 -0.3
360,546 - GFF675 0.51 -0.3
360,546 - GFF675 0.51 -0.4
360,677 + GFF675 0.67 -0.1
360,677 + GFF675 0.67 -0.0
360,677 + GFF675 0.67 -0.0
360,677 + GFF675 0.67 -0.5
360,677 + GFF675 0.67 -0.2
360,677 + GFF675 0.67 +0.4
360,677 + GFF675 0.67 -0.2
360,677 + GFF675 0.67 +0.8
360,678 - GFF675 0.67 -0.1
360,743 + GFF675 0.74 -1.3
360,749 + GFF675 0.75 -0.4
360,749 + GFF675 0.75 +0.4
360,750 - GFF675 0.75 +0.8
360,750 - GFF675 0.75 -0.0
360,750 - GFF675 0.75 +1.1

Or see this region's nucleotide sequence