Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF657

Experiment: Ying_sugar7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF656 and GFF657 are separated by 28 nucleotidesGFF657 and GFF658 are separated by 248 nucleotidesGFF658 and GFF659 are separated by 102 nucleotides GFF656 - Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8), at 336,633 to 338,771 GFF656 GFF657 - Probable tonB-dependent receptor yncD precursor, at 338,800 to 340,893 GFF657 GFF658 - Glutathione S-transferase N-terminal domain protein (EC 2.5.1.18), at 341,142 to 341,786 GFF658 GFF659 - hypothetical protein, at 341,889 to 342,281 GFF659 Position (kb) 338 339 340 341Strain fitness (log2 ratio) -2 -1 0 1 2at 337.828 kb on - strand, within GFF656at 337.935 kb on + strand, within GFF656at 337.936 kb on - strand, within GFF656at 337.959 kb on + strand, within GFF656at 338.162 kb on + strand, within GFF656at 338.244 kb on + strand, within GFF656at 338.245 kb on - strand, within GFF656at 338.316 kb on + strand, within GFF656at 338.317 kb on - strand, within GFF656at 338.317 kb on - strand, within GFF656at 338.317 kb on - strand, within GFF656at 338.317 kb on - strand, within GFF656at 338.337 kb on + strand, within GFF656at 338.337 kb on + strand, within GFF656at 338.337 kb on + strand, within GFF656at 338.337 kb on + strand, within GFF656at 338.337 kb on + strand, within GFF656at 338.337 kb on + strand, within GFF656at 338.337 kb on + strand, within GFF656at 338.338 kb on - strand, within GFF656at 338.338 kb on - strand, within GFF656at 338.338 kb on - strand, within GFF656at 338.338 kb on - strand, within GFF656at 338.338 kb on - strand, within GFF656at 338.371 kb on - strand, within GFF656at 338.418 kb on + strand, within GFF656at 338.419 kb on - strand, within GFF656at 338.419 kb on - strand, within GFF656at 338.419 kb on - strand, within GFF656at 338.466 kb on + strand, within GFF656at 338.466 kb on + strand, within GFF656at 338.466 kb on + strand, within GFF656at 338.467 kb on - strand, within GFF656at 338.607 kb on + strandat 338.608 kb on - strandat 338.608 kb on - strandat 339.019 kb on + strand, within GFF657at 339.020 kb on - strand, within GFF657at 339.094 kb on + strand, within GFF657at 339.094 kb on + strand, within GFF657at 339.094 kb on + strand, within GFF657at 339.095 kb on - strand, within GFF657at 339.095 kb on - strand, within GFF657at 339.095 kb on - strand, within GFF657at 339.095 kb on - strand, within GFF657at 339.205 kb on + strand, within GFF657at 339.364 kb on + strand, within GFF657at 339.364 kb on + strand, within GFF657at 339.670 kb on + strand, within GFF657at 339.769 kb on + strand, within GFF657at 339.769 kb on + strand, within GFF657at 339.808 kb on + strand, within GFF657at 339.809 kb on - strand, within GFF657at 339.809 kb on - strand, within GFF657at 339.961 kb on + strand, within GFF657at 339.961 kb on + strand, within GFF657at 339.961 kb on + strand, within GFF657at 339.961 kb on + strand, within GFF657at 339.962 kb on - strand, within GFF657at 339.962 kb on - strand, within GFF657at 340.048 kb on + strand, within GFF657at 340.049 kb on - strand, within GFF657at 340.460 kb on - strand, within GFF657at 340.583 kb on - strand, within GFF657at 340.789 kb on + strandat 340.790 kb on - strandat 340.790 kb on - strandat 340.988 kb on + strandat 340.988 kb on + strandat 340.988 kb on + strandat 340.989 kb on - strandat 341.039 kb on + strandat 341.236 kb on + strand, within GFF658at 341.236 kb on + strand, within GFF658at 341.263 kb on + strand, within GFF658at 341.264 kb on - strand, within GFF658at 341.264 kb on - strand, within GFF658at 341.264 kb on - strand, within GFF658at 341.264 kb on - strand, within GFF658at 341.264 kb on - strand, within GFF658at 341.275 kb on + strand, within GFF658at 341.275 kb on + strand, within GFF658at 341.275 kb on + strand, within GFF658at 341.275 kb on + strand, within GFF658at 341.276 kb on - strand, within GFF658at 341.360 kb on - strand, within GFF658at 341.509 kb on + strand, within GFF658at 341.509 kb on + strand, within GFF658at 341.509 kb on + strand, within GFF658at 341.509 kb on + strand, within GFF658at 341.576 kb on - strand, within GFF658at 341.590 kb on + strand, within GFF658at 341.642 kb on - strand, within GFF658at 341.749 kb on + strandat 341.750 kb on - strandat 341.750 kb on - strandat 341.750 kb on - strandat 341.752 kb on + strandat 341.752 kb on + strandat 341.753 kb on - strandat 341.753 kb on - strandat 341.799 kb on + strandat 341.799 kb on + strandat 341.799 kb on + strandat 341.800 kb on - strandat 341.825 kb on + strandat 341.825 kb on + strandat 341.825 kb on + strandat 341.826 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
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337,828 - GFF656 0.56 +0.9
337,935 + GFF656 0.61 +0.6
337,936 - GFF656 0.61 +0.3
337,959 + GFF656 0.62 +1.3
338,162 + GFF656 0.71 -1.3
338,244 + GFF656 0.75 +0.7
338,245 - GFF656 0.75 -0.1
338,316 + GFF656 0.79 -0.8
338,317 - GFF656 0.79 -0.6
338,317 - GFF656 0.79 -0.2
338,317 - GFF656 0.79 -0.5
338,317 - GFF656 0.79 -0.3
338,337 + GFF656 0.80 +0.2
338,337 + GFF656 0.80 +0.0
338,337 + GFF656 0.80 +2.2
338,337 + GFF656 0.80 -0.3
338,337 + GFF656 0.80 +0.6
338,337 + GFF656 0.80 -0.3
338,337 + GFF656 0.80 -0.7
338,338 - GFF656 0.80 +0.9
338,338 - GFF656 0.80 +0.3
338,338 - GFF656 0.80 +0.7
338,338 - GFF656 0.80 +0.1
338,338 - GFF656 0.80 +0.6
338,371 - GFF656 0.81 -0.5
338,418 + GFF656 0.83 +0.6
338,419 - GFF656 0.83 -0.1
338,419 - GFF656 0.83 -0.0
338,419 - GFF656 0.83 +0.4
338,466 + GFF656 0.86 +0.0
338,466 + GFF656 0.86 +0.3
338,466 + GFF656 0.86 +0.2
338,467 - GFF656 0.86 -0.0
338,607 + +0.0
338,608 - +0.9
338,608 - +0.8
339,019 + GFF657 0.10 -0.4
339,020 - GFF657 0.11 +1.0
339,094 + GFF657 0.14 +0.2
339,094 + GFF657 0.14 +0.6
339,094 + GFF657 0.14 -0.2
339,095 - GFF657 0.14 -0.6
339,095 - GFF657 0.14 -0.2
339,095 - GFF657 0.14 -0.8
339,095 - GFF657 0.14 +0.1
339,205 + GFF657 0.19 +0.8
339,364 + GFF657 0.27 +0.1
339,364 + GFF657 0.27 -0.0
339,670 + GFF657 0.42 -0.0
339,769 + GFF657 0.46 -0.2
339,769 + GFF657 0.46 -0.0
339,808 + GFF657 0.48 -0.1
339,809 - GFF657 0.48 -0.4
339,809 - GFF657 0.48 +0.0
339,961 + GFF657 0.55 -0.9
339,961 + GFF657 0.55 -1.0
339,961 + GFF657 0.55 +0.6
339,961 + GFF657 0.55 -0.6
339,962 - GFF657 0.55 +0.4
339,962 - GFF657 0.55 -0.6
340,048 + GFF657 0.60 -0.2
340,049 - GFF657 0.60 -0.0
340,460 - GFF657 0.79 +0.1
340,583 - GFF657 0.85 -0.3
340,789 + -0.3
340,790 - +0.8
340,790 - +1.4
340,988 + +1.3
340,988 + +0.9
340,988 + +0.4
340,989 - -0.5
341,039 + -0.4
341,236 + GFF658 0.15 -1.2
341,236 + GFF658 0.15 +0.4
341,263 + GFF658 0.19 -0.2
341,264 - GFF658 0.19 -0.2
341,264 - GFF658 0.19 +0.2
341,264 - GFF658 0.19 -0.2
341,264 - GFF658 0.19 -0.3
341,264 - GFF658 0.19 -1.3
341,275 + GFF658 0.21 +0.5
341,275 + GFF658 0.21 +0.1
341,275 + GFF658 0.21 -2.3
341,275 + GFF658 0.21 -0.0
341,276 - GFF658 0.21 -0.1
341,360 - GFF658 0.34 +0.6
341,509 + GFF658 0.57 +1.0
341,509 + GFF658 0.57 +0.7
341,509 + GFF658 0.57 +0.6
341,509 + GFF658 0.57 -0.2
341,576 - GFF658 0.67 -0.1
341,590 + GFF658 0.69 +0.6
341,642 - GFF658 0.78 -0.0
341,749 + -0.0
341,750 - -0.0
341,750 - +0.5
341,750 - +0.1
341,752 + -0.0
341,752 + -0.5
341,753 - -0.3
341,753 - -0.3
341,799 + -0.3
341,799 + +0.2
341,799 + -0.9
341,800 - -0.9
341,825 + +0.1
341,825 + +1.2
341,825 + +0.7
341,826 - +0.0

Or see this region's nucleotide sequence