Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF605 and GFF606 overlap by 4 nucleotides GFF606 and GFF607 are separated by 446 nucleotides
GFF605 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 279,447 to 280,445
GFF605
GFF606 - Permease of the drug/metabolite transporter (DMT) superfamily, at 280,442 to 281,353
GFF606
GFF607 - Organophosphate pesticide hydrolase, at 281,800 to 282,753
GFF607
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1 at 279.609 kb on + strand, within GFF605 at 279.609 kb on + strand, within GFF605 at 279.610 kb on - strand, within GFF605 at 279.610 kb on - strand, within GFF605 at 279.610 kb on - strand, within GFF605 at 279.610 kb on - strand, within GFF605 at 279.826 kb on - strand, within GFF605 at 279.831 kb on + strand, within GFF605 at 280.071 kb on + strand, within GFF605 at 280.149 kb on + strand, within GFF605 at 280.149 kb on + strand, within GFF605 at 280.149 kb on + strand, within GFF605 at 280.150 kb on - strand, within GFF605 at 280.150 kb on - strand, within GFF605 at 280.527 kb on - strand at 280.634 kb on + strand, within GFF606 at 280.635 kb on - strand, within GFF606 at 280.635 kb on - strand, within GFF606 at 280.646 kb on + strand, within GFF606 at 280.647 kb on - strand, within GFF606 at 280.647 kb on - strand, within GFF606 at 280.970 kb on + strand, within GFF606 at 280.987 kb on + strand, within GFF606 at 280.987 kb on + strand, within GFF606 at 280.988 kb on - strand, within GFF606 at 280.988 kb on - strand, within GFF606 at 280.988 kb on - strand, within GFF606 at 281.141 kb on + strand, within GFF606 at 281.141 kb on + strand, within GFF606 at 281.142 kb on - strand, within GFF606 at 281.142 kb on - strand, within GFF606 at 281.762 kb on - strand at 281.905 kb on + strand, within GFF607 at 281.906 kb on - strand, within GFF607 at 281.906 kb on - strand, within GFF607 at 282.064 kb on + strand, within GFF607 at 282.065 kb on - strand, within GFF607
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 279,609 + GFF605 0.16 +0.0 279,609 + GFF605 0.16 +0.3 279,610 - GFF605 0.16 +0.9 279,610 - GFF605 0.16 +0.4 279,610 - GFF605 0.16 +0.3 279,610 - GFF605 0.16 -0.1 279,826 - GFF605 0.38 -2.6 279,831 + GFF605 0.38 +0.1 280,071 + GFF605 0.62 -0.1 280,149 + GFF605 0.70 +0.0 280,149 + GFF605 0.70 +0.5 280,149 + GFF605 0.70 +0.5 280,150 - GFF605 0.70 +0.4 280,150 - GFF605 0.70 +0.1 280,527 - +0.6 280,634 + GFF606 0.21 +0.0 280,635 - GFF606 0.21 -0.6 280,635 - GFF606 0.21 -0.3 280,646 + GFF606 0.22 -0.2 280,647 - GFF606 0.22 -0.1 280,647 - GFF606 0.22 +0.4 280,970 + GFF606 0.58 +0.2 280,987 + GFF606 0.60 -1.0 280,987 + GFF606 0.60 +0.5 280,988 - GFF606 0.60 -0.1 280,988 - GFF606 0.60 -0.1 280,988 - GFF606 0.60 -0.7 281,141 + GFF606 0.77 -0.6 281,141 + GFF606 0.77 +0.1 281,142 - GFF606 0.77 -0.9 281,142 - GFF606 0.77 -0.3 281,762 - -0.5 281,905 + GFF607 0.11 +0.4 281,906 - GFF607 0.11 +0.4 281,906 - GFF607 0.11 +0.2 282,064 + GFF607 0.28 +0.6 282,065 - GFF607 0.28 +1.2
Or see this region's nucleotide sequence