Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF6

Experiment: Ying_sugar7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5 and GFF6 are separated by 180 nucleotidesGFF6 and GFF7 are separated by 60 nucleotides GFF5 - Transcriptional regulator, LysR family, at 2,364 to 3,236 GFF5 GFF6 - Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation), at 3,417 to 4,706 GFF6 GFF7 - hypothetical protein, at 4,767 to 5,771 GFF7 Position (kb) 3 4 5Strain fitness (log2 ratio) -2 -1 0 1 2at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.458 kb on + strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.459 kb on - strand, within GFF5at 2.599 kb on + strand, within GFF5at 2.599 kb on + strand, within GFF5at 2.599 kb on + strand, within GFF5at 2.599 kb on + strand, within GFF5at 2.599 kb on + strand, within GFF5at 2.599 kb on + strand, within GFF5at 2.599 kb on + strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.600 kb on - strand, within GFF5at 2.650 kb on + strand, within GFF5at 2.650 kb on + strand, within GFF5at 2.651 kb on - strand, within GFF5at 2.651 kb on - strand, within GFF5at 2.964 kb on + strand, within GFF5at 2.965 kb on - strand, within GFF5at 2.982 kb on - strand, within GFF5at 3.266 kb on - strandat 3.628 kb on - strand, within GFF6at 3.909 kb on + strand, within GFF6at 3.909 kb on + strand, within GFF6at 3.909 kb on + strand, within GFF6at 3.909 kb on + strand, within GFF6at 3.909 kb on + strand, within GFF6at 3.910 kb on - strand, within GFF6at 3.910 kb on - strand, within GFF6at 3.910 kb on - strand, within GFF6at 4.020 kb on + strand, within GFF6at 4.302 kb on + strand, within GFF6at 4.323 kb on + strand, within GFF6at 4.392 kb on + strand, within GFF6at 4.392 kb on + strand, within GFF6at 4.866 kb on + strandat 4.912 kb on - strand, within GFF7at 4.912 kb on - strand, within GFF7at 4.922 kb on - strand, within GFF7at 5.043 kb on + strand, within GFF7at 5.043 kb on + strand, within GFF7at 5.043 kb on + strand, within GFF7at 5.044 kb on - strand, within GFF7at 5.044 kb on - strand, within GFF7at 5.044 kb on - strand, within GFF7at 5.418 kb on + strand, within GFF7at 5.418 kb on + strand, within GFF7at 5.419 kb on - strand, within GFF7at 5.419 kb on - strand, within GFF7at 5.460 kb on + strand, within GFF7

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
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2,458 + GFF5 0.11 +0.3
2,458 + GFF5 0.11 +0.8
2,458 + GFF5 0.11 +0.2
2,458 + GFF5 0.11 +0.8
2,458 + GFF5 0.11 +0.2
2,458 + GFF5 0.11 +0.4
2,458 + GFF5 0.11 -0.4
2,458 + GFF5 0.11 +0.1
2,458 + GFF5 0.11 -0.3
2,458 + GFF5 0.11 -0.1
2,458 + GFF5 0.11 +0.2
2,458 + GFF5 0.11 +0.1
2,459 - GFF5 0.11 +0.1
2,459 - GFF5 0.11 -0.1
2,459 - GFF5 0.11 +0.1
2,459 - GFF5 0.11 +1.2
2,459 - GFF5 0.11 -0.5
2,459 - GFF5 0.11 -0.1
2,459 - GFF5 0.11 -0.4
2,459 - GFF5 0.11 -0.0
2,459 - GFF5 0.11 +0.1
2,459 - GFF5 0.11 +0.3
2,459 - GFF5 0.11 -0.4
2,459 - GFF5 0.11 +0.3
2,459 - GFF5 0.11 -0.2
2,459 - GFF5 0.11 -2.3
2,599 + GFF5 0.27 +0.1
2,599 + GFF5 0.27 -0.5
2,599 + GFF5 0.27 -0.3
2,599 + GFF5 0.27 -0.1
2,599 + GFF5 0.27 +0.1
2,599 + GFF5 0.27 +0.2
2,599 + GFF5 0.27 +0.2
2,600 - GFF5 0.27 +0.4
2,600 - GFF5 0.27 +0.5
2,600 - GFF5 0.27 -0.2
2,600 - GFF5 0.27 +1.0
2,600 - GFF5 0.27 +0.9
2,600 - GFF5 0.27 +0.5
2,600 - GFF5 0.27 -0.9
2,600 - GFF5 0.27 +1.2
2,600 - GFF5 0.27 -0.1
2,600 - GFF5 0.27 +0.0
2,600 - GFF5 0.27 -0.5
2,600 - GFF5 0.27 -0.9
2,650 + GFF5 0.33 +0.1
2,650 + GFF5 0.33 +0.3
2,651 - GFF5 0.33 +0.1
2,651 - GFF5 0.33 +0.1
2,964 + GFF5 0.69 +0.1
2,965 - GFF5 0.69 +0.3
2,982 - GFF5 0.71 -0.3
3,266 - +0.2
3,628 - GFF6 0.16 +0.5
3,909 + GFF6 0.38 +0.1
3,909 + GFF6 0.38 -0.4
3,909 + GFF6 0.38 -0.6
3,909 + GFF6 0.38 -0.8
3,909 + GFF6 0.38 -0.1
3,910 - GFF6 0.38 -0.4
3,910 - GFF6 0.38 -0.3
3,910 - GFF6 0.38 +0.4
4,020 + GFF6 0.47 +2.1
4,302 + GFF6 0.69 -0.7
4,323 + GFF6 0.70 +0.1
4,392 + GFF6 0.76 -1.2
4,392 + GFF6 0.76 +0.1
4,866 + -1.1
4,912 - GFF7 0.14 +1.1
4,912 - GFF7 0.14 +0.1
4,922 - GFF7 0.15 +0.2
5,043 + GFF7 0.27 +0.1
5,043 + GFF7 0.27 -0.5
5,043 + GFF7 0.27 -0.3
5,044 - GFF7 0.28 +0.2
5,044 - GFF7 0.28 +0.5
5,044 - GFF7 0.28 -0.5
5,418 + GFF7 0.65 +0.1
5,418 + GFF7 0.65 +0.9
5,419 - GFF7 0.65 +0.5
5,419 - GFF7 0.65 +1.1
5,460 + GFF7 0.69 +0.2

Or see this region's nucleotide sequence