Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5737

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
2,765,144	+				-0.9
2,765,144	+				-1.3
2,765,145	-				+0.9
2,765,145	-				+0.4
2,765,145	-				+0.4
2,765,145	-				+1.6
2,765,196	+				-0.4
2,765,197	-				+0.5
2,765,215	-				+0.7
2,765,277	+		GFF5736	0.12	+0.6
2,765,289	+		GFF5736	0.13	+0.1
2,765,289	+		GFF5736	0.13	-1.8
2,765,355	+		GFF5736	0.23	-0.6
2,765,355	+		GFF5736	0.23	-0.1
2,765,355	-		GFF5736	0.23	+0.6
2,765,356	-		GFF5736	0.23	-2.0
2,765,356	-		GFF5736	0.23	-0.4
2,765,356	-		GFF5736	0.23	-1.0
2,765,469	+		GFF5736	0.39	-0.1
2,765,469	+		GFF5736	0.39	-0.1
2,765,469	+		GFF5736	0.39	+0.2
2,765,469	+		GFF5736	0.39	+0.6
2,765,470	-		GFF5736	0.39	-0.2
2,765,470	-		GFF5736	0.39	+0.3
2,765,470	-		GFF5736	0.39	+1.0
2,765,470	-		GFF5736	0.39	-0.2
2,765,880	+				-0.1
2,765,880	+				-0.3
2,765,880	+				+0.2
2,765,892	+				+0.1
2,765,893	-				-0.3
2,765,893	-				+0.4
2,765,893	-				-0.9
2,765,893	-				+0.4
2,765,972	+				-0.4
2,766,026	+		GFF5737	0.15	-2.2
2,766,026	+		GFF5737	0.15	-1.1
2,766,027	-		GFF5737	0.16	-1.4
2,766,029	+		GFF5737	0.16	-0.7
2,766,029	+		GFF5737	0.16	-1.6
2,766,029	+		GFF5737	0.16	-1.5
2,766,029	+		GFF5737	0.16	-0.0
2,766,029	+		GFF5737	0.16	-0.6
2,766,029	+		GFF5737	0.16	-3.9
2,766,030	-		GFF5737	0.17	-1.5
2,766,030	-		GFF5737	0.17	-1.6
2,766,464	+				-1.1
2,766,464	+				-0.3
2,766,465	-				-0.6
2,766,465	-				+0.2
2,766,465	-				+0.8
2,766,465	-				+0.2
2,766,465	-				+0.7
2,767,243	+				+0.8
2,767,243	+				-0.2
2,767,244	-				-0.4
2,767,244	-				+1.0
2,767,244	-				-0.3