Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5525

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
2,529,290	-		GFF5524	0.25	+0.2
2,529,290	-		GFF5524	0.25	+0.1
2,529,290	-		GFF5524	0.25	+0.2
2,529,304	+		GFF5524	0.27	-1.2
2,529,397	+		GFF5524	0.36	+0.5
2,529,397	+		GFF5524	0.36	-0.8
2,529,398	-		GFF5524	0.36	-0.4
2,529,406	+		GFF5524	0.37	-0.1
2,529,406	+		GFF5524	0.37	-0.6
2,529,407	-		GFF5524	0.37	-0.2
2,529,407	-		GFF5524	0.37	+0.2
2,529,722	-		GFF5524	0.68	-1.6
2,529,722	-		GFF5524	0.68	-0.6
2,529,760	+		GFF5524	0.72	-0.1
2,529,760	+		GFF5524	0.72	-0.4
2,529,760	+		GFF5524	0.72	-0.4
2,529,761	-		GFF5524	0.72	-0.0
2,529,761	-		GFF5524	0.72	-0.1
2,529,761	-		GFF5524	0.72	+0.5
2,530,045	+				+1.0
2,530,045	+				-1.0
2,530,046	-				-1.3
2,530,803	+		GFF5526	0.13	+1.0
2,531,034	+		GFF5526	0.31	+1.8
2,531,119	-		GFF5526	0.37	+0.6
2,531,214	+		GFF5526	0.45	+1.0
2,531,214	+		GFF5526	0.45	+0.8
2,531,214	+		GFF5526	0.45	-1.7
2,531,214	+		GFF5526	0.45	+1.4
2,531,215	-		GFF5526	0.45	+0.4
2,531,215	-		GFF5526	0.45	-0.0
2,531,215	-		GFF5526	0.45	+0.1
2,531,340	+		GFF5526	0.54	+2.1
2,531,444	+		GFF5526	0.62	+2.0
2,531,445	-		GFF5526	0.62	-0.9
2,531,613	+		GFF5526	0.75	+2.0
2,531,614	-		GFF5526	0.76	+0.9