Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF539 and GFF540 overlap by 4 nucleotides GFF540 and GFF541 are separated by 3 nucleotides GFF541 and GFF542 are separated by 87 nucleotides
GFF539 - Transcriptional regulator, GntR family, at 208,184 to 208,879
GFF539
GFF540 - Putrescine transport system permease protein potI, at 208,876 to 209,769
GFF540
GFF541 - ABC transporter permease protein, at 209,773 to 210,771
GFF541
GFF542 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 210,859 to 212,154
GFF542
Position (kb) 209
210
211 Strain fitness (log2 ratio) -1
0
1 at 208.852 kb on - strand at 208.852 kb on - strand at 208.982 kb on + strand, within GFF540 at 209.309 kb on + strand, within GFF540 at 209.309 kb on + strand, within GFF540 at 209.310 kb on - strand, within GFF540 at 209.310 kb on - strand, within GFF540 at 209.441 kb on + strand, within GFF540 at 209.441 kb on + strand, within GFF540 at 209.442 kb on - strand, within GFF540 at 209.690 kb on + strand at 209.691 kb on - strand at 209.879 kb on + strand, within GFF541 at 209.879 kb on + strand, within GFF541 at 209.880 kb on - strand, within GFF541 at 210.135 kb on - strand, within GFF541 at 210.362 kb on + strand, within GFF541 at 210.431 kb on + strand, within GFF541 at 210.431 kb on + strand, within GFF541 at 210.432 kb on - strand, within GFF541 at 210.432 kb on - strand, within GFF541 at 210.534 kb on - strand, within GFF541 at 210.897 kb on - strand at 210.897 kb on - strand at 211.047 kb on - strand, within GFF542 at 211.100 kb on + strand, within GFF542 at 211.101 kb on - strand, within GFF542 at 211.103 kb on + strand, within GFF542 at 211.163 kb on + strand, within GFF542 at 211.164 kb on - strand, within GFF542 at 211.454 kb on + strand, within GFF542 at 211.622 kb on + strand, within GFF542 at 211.622 kb on + strand, within GFF542
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 208,852 - +1.0 208,852 - +0.6 208,982 + GFF540 0.12 +0.6 209,309 + GFF540 0.48 +0.1 209,309 + GFF540 0.48 -1.2 209,310 - GFF540 0.49 +0.1 209,310 - GFF540 0.49 +0.3 209,441 + GFF540 0.63 -0.6 209,441 + GFF540 0.63 -0.1 209,442 - GFF540 0.63 +0.4 209,690 + -0.2 209,691 - +0.1 209,879 + GFF541 0.11 +0.7 209,879 + GFF541 0.11 -0.9 209,880 - GFF541 0.11 +0.0 210,135 - GFF541 0.36 +0.4 210,362 + GFF541 0.59 +0.5 210,431 + GFF541 0.66 +0.5 210,431 + GFF541 0.66 +1.6 210,432 - GFF541 0.66 +1.4 210,432 - GFF541 0.66 +0.3 210,534 - GFF541 0.76 -0.3 210,897 - +0.7 210,897 - -1.3 211,047 - GFF542 0.15 +0.4 211,100 + GFF542 0.19 +0.0 211,101 - GFF542 0.19 +0.5 211,103 + GFF542 0.19 -0.6 211,163 + GFF542 0.23 +0.8 211,164 - GFF542 0.24 +1.0 211,454 + GFF542 0.46 +0.8 211,622 + GFF542 0.59 -0.2 211,622 + GFF542 0.59 -0.3
Or see this region's nucleotide sequence