Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5394

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
2,397,480	-		GFF5392	0.35	+0.3
2,397,480	-		GFF5392	0.35	+0.9
2,397,481	+		GFF5392	0.35	+0.3
2,397,481	+		GFF5392	0.35	+1.4
2,397,830	-		GFF5392	0.78	+0.2
2,398,048	-				+0.4
2,398,120	-				+2.3
2,398,120	-				+0.7
2,398,449	+				-1.3
2,398,449	+				+1.0
2,398,622	+		GFF5394	0.42	+1.2
2,398,640	+		GFF5394	0.47	+0.4
2,398,640	+		GFF5394	0.47	-1.0
2,398,670	+		GFF5394	0.55	+0.6
2,398,670	+		GFF5394	0.55	+1.0
2,398,671	-		GFF5394	0.55	+1.0
2,398,709	+		GFF5394	0.66	+0.1
2,398,969	+				-2.9
2,399,047	+				-1.3
2,399,057	-				-3.1
2,399,149	+		GFF5395	0.15	-2.7
2,399,281	+		GFF5395	0.23	-2.8
2,399,491	+		GFF5395	0.36	-3.1