Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5390

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
2,393,560	+		GFF5389	0.67	+0.7
2,393,572	+		GFF5389	0.67	-0.1
2,393,573	-		GFF5389	0.67	+0.5
2,393,585	-		GFF5389	0.68	-0.3
2,393,585	-		GFF5389	0.68	+0.6
2,393,585	-		GFF5389	0.68	+1.3
2,393,806	+		GFF5389	0.78	+1.0
2,393,903	-		GFF5389	0.82	-0.1
2,393,903	-		GFF5389	0.82	+0.5
2,394,148	+				+0.4
2,394,148	+				+0.4
2,394,256	+				+2.0
2,394,256	+				+0.4
2,394,257	-				-0.1
2,394,357	+				+2.0
2,394,358	-				+0.3
2,394,358	-				-0.7
2,394,527	-				-0.2
2,394,571	+		GFF5390	0.11	+0.5
2,394,571	+		GFF5390	0.11	+0.4
2,394,625	+		GFF5390	0.15	-0.6
2,394,625	+		GFF5390	0.15	+0.6
2,394,626	-		GFF5390	0.15	+0.6
2,394,908	-		GFF5390	0.35	+1.1
2,394,956	-		GFF5390	0.38	-0.6
2,395,111	+		GFF5390	0.50	+0.4
2,395,333	+		GFF5390	0.66	-0.8
2,395,333	+		GFF5390	0.66	+0.3
2,395,333	+		GFF5390	0.66	-1.0
2,395,334	-		GFF5390	0.66	-0.0
2,395,334	-		GFF5390	0.66	-0.1
2,395,334	-		GFF5390	0.66	-0.2
2,395,334	-		GFF5390	0.66	-0.0
2,395,433	+		GFF5390	0.73	+1.2
2,395,456	+		GFF5390	0.74	+0.5
2,395,613	-		GFF5390	0.86	+0.1
2,395,680	+				-0.3
2,395,904	-				-0.1
2,396,000	-				+1.3
2,396,089	+				-0.5
2,396,089	+				+0.4
2,396,089	+				-1.1
2,396,089	+				+0.0
2,396,116	+				+0.4
2,396,117	-				+0.3
2,396,117	-				+0.2
2,396,117	-				+0.4
2,396,151	+				+0.3
2,396,151	+				+0.3
2,396,289	+				+0.3
2,396,289	+				+0.5
2,396,290	-				+0.1
2,396,290	-				+0.2
2,396,290	-				-0.2
2,396,290	-				-0.8
2,396,290	-				+0.1
2,396,290	-				+0.5
2,396,315	-				+1.0
2,396,333	+				-0.1
2,396,333	+				+0.3
2,396,334	-				+0.4
2,396,334	-				+0.6
2,396,388	-				+0.3
2,396,435	+				+0.4
2,396,435	+				-1.1
2,396,436	-				+0.1
2,396,436	-				+1.2
2,396,658	-		GFF5391	0.43	-1.3
2,396,658	-		GFF5391	0.43	+0.1