Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF536 and GFF537 are separated by 19 nucleotides GFF537 and GFF538 are separated by 93 nucleotides GFF538 and GFF539 overlap by 1 nucleotides
GFF536 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 204,518 to 205,654
GFF536
GFF537 - Metallo-beta-lactamase family protein, at 205,674 to 207,347
GFF537
GFF538 - Hydantoin racemase (EC 5.1.99.-), at 207,441 to 208,184
GFF538
GFF539 - Transcriptional regulator, GntR family, at 208,184 to 208,879
GFF539
Position (kb) 205
206
207
208 Strain fitness (log2 ratio) -1
0
1 at 204.699 kb on - strand, within GFF536 at 205.004 kb on + strand, within GFF536 at 205.223 kb on + strand, within GFF536 at 205.224 kb on - strand, within GFF536 at 205.376 kb on + strand, within GFF536 at 205.403 kb on + strand, within GFF536 at 205.403 kb on + strand, within GFF536 at 205.403 kb on + strand, within GFF536 at 205.569 kb on - strand at 205.586 kb on + strand at 205.768 kb on + strand at 205.942 kb on + strand, within GFF537 at 205.943 kb on - strand, within GFF537 at 206.017 kb on + strand, within GFF537 at 206.482 kb on + strand, within GFF537 at 206.650 kb on + strand, within GFF537 at 206.752 kb on + strand, within GFF537 at 207.233 kb on - strand at 208.033 kb on + strand, within GFF538 at 208.055 kb on - strand, within GFF538 at 208.055 kb on - strand, within GFF538
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 204,699 - GFF536 0.16 -0.4 205,004 + GFF536 0.43 +1.4 205,223 + GFF536 0.62 +0.5 205,224 - GFF536 0.62 -0.3 205,376 + GFF536 0.75 -0.4 205,403 + GFF536 0.78 +0.3 205,403 + GFF536 0.78 +0.2 205,403 + GFF536 0.78 +0.2 205,569 - +1.0 205,586 + +0.2 205,768 + -0.4 205,942 + GFF537 0.16 -1.0 205,943 - GFF537 0.16 -0.4 206,017 + GFF537 0.20 +0.7 206,482 + GFF537 0.48 +0.0 206,650 + GFF537 0.58 -1.0 206,752 + GFF537 0.64 +0.4 207,233 - +0.7 208,033 + GFF538 0.80 -0.1 208,055 - GFF538 0.83 +0.2 208,055 - GFF538 0.83 -0.6
Or see this region's nucleotide sequence