Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF505 and GFF506 are separated by 46 nucleotides GFF506 and GFF507 are separated by 3 nucleotides GFF507 and GFF508 overlap by 4 nucleotides
GFF505 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 172,376 to 173,542
GFF505
GFF506 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 173,589 to 175,445
GFF506
GFF507 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 175,449 to 176,237
GFF507
GFF508 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 176,234 to 177,061
GFF508
Position (kb) 173
174
175
176 Strain fitness (log2 ratio) -1
0
1 at 172.692 kb on + strand, within GFF505 at 172.719 kb on + strand, within GFF505 at 172.719 kb on + strand, within GFF505 at 172.768 kb on - strand, within GFF505 at 172.912 kb on - strand, within GFF505 at 173.133 kb on + strand, within GFF505 at 173.134 kb on - strand, within GFF505 at 173.134 kb on - strand, within GFF505 at 173.134 kb on - strand, within GFF505 at 173.134 kb on - strand, within GFF505 at 173.298 kb on + strand, within GFF505 at 173.299 kb on - strand, within GFF505 at 173.621 kb on - strand at 173.924 kb on - strand, within GFF506 at 173.924 kb on - strand, within GFF506 at 174.112 kb on + strand, within GFF506 at 174.112 kb on + strand, within GFF506 at 174.113 kb on - strand, within GFF506 at 174.182 kb on - strand, within GFF506 at 174.299 kb on - strand, within GFF506 at 174.551 kb on - strand, within GFF506 at 174.661 kb on + strand, within GFF506 at 174.662 kb on - strand, within GFF506 at 174.761 kb on - strand, within GFF506 at 174.776 kb on - strand, within GFF506 at 174.835 kb on + strand, within GFF506 at 175.099 kb on + strand, within GFF506 at 175.451 kb on - strand at 175.594 kb on + strand, within GFF507 at 175.595 kb on - strand, within GFF507 at 175.601 kb on - strand, within GFF507 at 175.852 kb on + strand, within GFF507 at 175.853 kb on - strand, within GFF507 at 176.295 kb on + strand at 176.295 kb on + strand at 176.296 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 172,692 + GFF505 0.27 +0.4 172,719 + GFF505 0.29 +1.2 172,719 + GFF505 0.29 -0.1 172,768 - GFF505 0.34 -0.8 172,912 - GFF505 0.46 +0.4 173,133 + GFF505 0.65 -0.3 173,134 - GFF505 0.65 +0.1 173,134 - GFF505 0.65 +0.3 173,134 - GFF505 0.65 +0.2 173,134 - GFF505 0.65 -0.7 173,298 + GFF505 0.79 +0.4 173,299 - GFF505 0.79 +0.3 173,621 - +0.5 173,924 - GFF506 0.18 +0.3 173,924 - GFF506 0.18 +1.7 174,112 + GFF506 0.28 -0.4 174,112 + GFF506 0.28 +1.5 174,113 - GFF506 0.28 +0.4 174,182 - GFF506 0.32 +1.0 174,299 - GFF506 0.38 -0.1 174,551 - GFF506 0.52 +1.0 174,661 + GFF506 0.58 -0.8 174,662 - GFF506 0.58 +0.4 174,761 - GFF506 0.63 -0.0 174,776 - GFF506 0.64 +0.3 174,835 + GFF506 0.67 -0.0 175,099 + GFF506 0.81 +0.1 175,451 - -0.2 175,594 + GFF507 0.18 -0.5 175,595 - GFF507 0.19 +0.5 175,601 - GFF507 0.19 -0.2 175,852 + GFF507 0.51 +0.4 175,853 - GFF507 0.51 -0.6 176,295 + -0.1 176,295 + +0.0 176,296 - -0.8
Or see this region's nucleotide sequence