Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5025

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
2,039,183	+		GFF5024	0.41	+0.2
2,039,184	-		GFF5024	0.41	-1.0
2,039,184	-		GFF5024	0.41	+0.4
2,039,225	+		GFF5024	0.45	-0.4
2,039,225	+		GFF5024	0.45	+0.3
2,039,226	-		GFF5024	0.45	+0.6
2,039,270	+		GFF5024	0.49	-0.0
2,039,270	+		GFF5024	0.49	-0.7
2,039,270	+		GFF5024	0.49	-0.0
2,039,271	-		GFF5024	0.49	+0.1
2,039,271	-		GFF5024	0.49	+0.7
2,039,300	+		GFF5024	0.52	-0.3
2,039,301	-		GFF5024	0.52	+0.1
2,039,301	-		GFF5024	0.52	+0.1
2,039,423	+		GFF5024	0.64	-0.2
2,039,475	-		GFF5024	0.69	+0.3
2,039,475	-		GFF5024	0.69	+0.0
2,039,794	+				+0.8
2,039,857	-				-1.0
2,039,925	+		GFF5025	0.38	+1.7
2,039,926	-		GFF5025	0.39	+0.1
2,039,926	-		GFF5025	0.39	+0.7
2,040,123	+		GFF5026	0.16	-1.2
2,040,289	-		GFF5026	0.30	-1.1
2,040,529	-		GFF5026	0.50	-0.0
2,040,561	+		GFF5026	0.53	+0.7
2,040,582	+		GFF5026	0.54	+0.3
2,040,583	-		GFF5026	0.54	+0.2
2,040,583	-		GFF5026	0.54	-0.9
2,040,583	-		GFF5026	0.54	-1.0
2,040,975	+		GFF5026	0.87	+1.0