Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4853 and GFF4854 are separated by 106 nucleotides GFF4854 and GFF4855 are separated by 32 nucleotides GFF4855 and GFF4856 are separated by 26 nucleotides
GFF4853 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 1,859,892 to 1,861,085
GFF4853
GFF4854 - Putative inner membrane protein YjeT (clustered with HflC), at 1,861,192 to 1,861,377
GFF4854
GFF4855 - HflC protein, at 1,861,410 to 1,862,303
GFF4855
GFF4856 - HflK protein, at 1,862,330 to 1,863,628
GFF4856
Position (kb) 1861
1862
1863 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1861.090 kb on - strand at 1861.106 kb on - strand at 1861.510 kb on + strand, within GFF4855 at 1861.510 kb on + strand, within GFF4855 at 1861.510 kb on + strand, within GFF4855 at 1861.510 kb on + strand, within GFF4855 at 1861.511 kb on - strand, within GFF4855 at 1861.624 kb on + strand, within GFF4855 at 1861.625 kb on - strand, within GFF4855 at 1861.748 kb on - strand, within GFF4855 at 1861.748 kb on - strand, within GFF4855 at 1862.002 kb on + strand, within GFF4855 at 1862.002 kb on + strand, within GFF4855 at 1862.002 kb on + strand, within GFF4855 at 1862.002 kb on + strand, within GFF4855 at 1862.003 kb on - strand, within GFF4855 at 1862.003 kb on - strand, within GFF4855 at 1862.003 kb on - strand, within GFF4855 at 1862.036 kb on - strand, within GFF4855 at 1862.036 kb on - strand, within GFF4855 at 1862.123 kb on - strand, within GFF4855 at 1862.123 kb on - strand, within GFF4855 at 1862.481 kb on + strand, within GFF4856 at 1862.481 kb on + strand, within GFF4856 at 1862.481 kb on + strand, within GFF4856 at 1862.481 kb on + strand, within GFF4856 at 1862.481 kb on + strand, within GFF4856 at 1862.535 kb on + strand, within GFF4856 at 1862.535 kb on + strand, within GFF4856 at 1862.536 kb on - strand, within GFF4856 at 1862.536 kb on - strand, within GFF4856 at 1862.536 kb on - strand, within GFF4856 at 1862.536 kb on - strand, within GFF4856 at 1862.536 kb on - strand, within GFF4856 at 1862.559 kb on + strand, within GFF4856 at 1862.559 kb on + strand, within GFF4856 at 1862.559 kb on + strand, within GFF4856 at 1862.560 kb on - strand, within GFF4856 at 1862.560 kb on - strand, within GFF4856 at 1862.595 kb on + strand, within GFF4856 at 1862.865 kb on + strand, within GFF4856 at 1862.865 kb on + strand, within GFF4856 at 1862.866 kb on - strand, within GFF4856 at 1862.866 kb on - strand, within GFF4856 at 1863.051 kb on + strand, within GFF4856 at 1863.051 kb on + strand, within GFF4856 at 1863.244 kb on - strand, within GFF4856 at 1863.244 kb on - strand, within GFF4856 at 1863.244 kb on - strand, within GFF4856
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 1,861,090 - -1.0 1,861,106 - -0.0 1,861,510 + GFF4855 0.11 -1.3 1,861,510 + GFF4855 0.11 -0.5 1,861,510 + GFF4855 0.11 -1.4 1,861,510 + GFF4855 0.11 -1.6 1,861,511 - GFF4855 0.11 +1.0 1,861,624 + GFF4855 0.24 +0.4 1,861,625 - GFF4855 0.24 -2.4 1,861,748 - GFF4855 0.38 -0.4 1,861,748 - GFF4855 0.38 -1.7 1,862,002 + GFF4855 0.66 -0.6 1,862,002 + GFF4855 0.66 -1.0 1,862,002 + GFF4855 0.66 -1.0 1,862,002 + GFF4855 0.66 -1.4 1,862,003 - GFF4855 0.66 -0.6 1,862,003 - GFF4855 0.66 -1.7 1,862,003 - GFF4855 0.66 -0.4 1,862,036 - GFF4855 0.70 -1.2 1,862,036 - GFF4855 0.70 -0.6 1,862,123 - GFF4855 0.80 -2.2 1,862,123 - GFF4855 0.80 -1.9 1,862,481 + GFF4856 0.12 -1.9 1,862,481 + GFF4856 0.12 -0.6 1,862,481 + GFF4856 0.12 -0.0 1,862,481 + GFF4856 0.12 -2.2 1,862,481 + GFF4856 0.12 -2.6 1,862,535 + GFF4856 0.16 -1.4 1,862,535 + GFF4856 0.16 -1.4 1,862,536 - GFF4856 0.16 -1.4 1,862,536 - GFF4856 0.16 -0.9 1,862,536 - GFF4856 0.16 -1.6 1,862,536 - GFF4856 0.16 -1.9 1,862,536 - GFF4856 0.16 -1.0 1,862,559 + GFF4856 0.18 +0.5 1,862,559 + GFF4856 0.18 -1.9 1,862,559 + GFF4856 0.18 -0.9 1,862,560 - GFF4856 0.18 -2.1 1,862,560 - GFF4856 0.18 +0.1 1,862,595 + GFF4856 0.20 -2.7 1,862,865 + GFF4856 0.41 -2.9 1,862,865 + GFF4856 0.41 -0.0 1,862,866 - GFF4856 0.41 -0.4 1,862,866 - GFF4856 0.41 -0.0 1,863,051 + GFF4856 0.56 -2.1 1,863,051 + GFF4856 0.56 -2.4 1,863,244 - GFF4856 0.70 -1.9 1,863,244 - GFF4856 0.70 -2.7 1,863,244 - GFF4856 0.70 -1.0
Or see this region's nucleotide sequence