Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4642

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
1,590,644	+		GFF4641	0.14	+2.5
1,590,645	-		GFF4641	0.15	-0.7
1,590,645	-		GFF4641	0.15	+1.1
1,590,852	-		GFF4641	0.33	+0.4
1,591,008	-		GFF4641	0.47	-0.1
1,591,765	-		GFF4642	0.25	+0.2
1,592,162	-		GFF4642	0.83	-0.0
1,592,162	-		GFF4642	0.83	+0.5
1,592,162	-		GFF4642	0.83	+0.0
1,592,162	-		GFF4642	0.83	+0.5
1,592,317	+				-0.8
1,592,318	-				-0.9
1,592,318	-				+0.2
1,592,424	-		GFF4643	0.17	+1.2
1,592,494	+		GFF4643	0.25	-0.9
1,592,525	+		GFF4643	0.28	+0.9
1,592,526	-		GFF4643	0.28	+0.4
1,592,526	-		GFF4643	0.28	+0.1
1,592,576	-		GFF4643	0.33	+0.5
1,592,576	-		GFF4643	0.33	+0.6
1,592,618	+		GFF4643	0.38	+0.3
1,592,618	+		GFF4643	0.38	+0.3
1,592,618	+		GFF4643	0.38	-0.5
1,592,618	+		GFF4643	0.38	+0.5
1,592,619	-		GFF4643	0.38	+0.1
1,592,619	-		GFF4643	0.38	-0.9
1,592,619	-		GFF4643	0.38	-0.3
1,592,622	-		GFF4643	0.38	+0.2
1,592,918	+		GFF4643	0.69	+0.3