Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF456 and GFF457 are separated by 8 nucleotides GFF457 and GFF458 overlap by 4 nucleotides GFF458 and GFF459 are separated by 7 nucleotides GFF459 and GFF460 are separated by 105 nucleotides GFF460 and GFF461 overlap by 4 nucleotides
GFF456 - hypothetical protein, at 123,236 to 123,715
GFF456
GFF457 - bll2395; hypothetical protein, at 123,724 to 124,113
GFF457
GFF458 - DGPFAETKE family protein, at 124,110 to 124,499
GFF458
GFF459 - Tricarboxylate transport protein TctC, at 124,507 to 125,487
GFF459
GFF460 - Transcriptional regulator, MarR family, at 125,593 to 126,069
GFF460
GFF461 - Transcriptional regulator, LysR family, at 126,066 to 126,998
GFF461
Position (kb) 124
125
126 Strain fitness (log2 ratio) -1
0
1 at 123.641 kb on + strand, within GFF456 at 123.641 kb on + strand, within GFF456 at 123.642 kb on - strand, within GFF456 at 123.803 kb on - strand, within GFF457 at 124.109 kb on + strand at 124.109 kb on + strand at 124.212 kb on + strand, within GFF458 at 124.212 kb on + strand, within GFF458 at 124.640 kb on + strand, within GFF459 at 124.641 kb on - strand, within GFF459 at 124.932 kb on - strand, within GFF459 at 125.018 kb on + strand, within GFF459 at 125.019 kb on - strand, within GFF459 at 125.342 kb on + strand, within GFF459 at 125.342 kb on + strand, within GFF459 at 125.343 kb on - strand, within GFF459 at 125.528 kb on + strand at 125.528 kb on + strand at 125.555 kb on - strand at 125.560 kb on + strand at 125.561 kb on - strand at 125.561 kb on - strand at 125.561 kb on - strand at 125.561 kb on - strand at 125.894 kb on - strand, within GFF460 at 126.038 kb on - strand at 126.188 kb on - strand, within GFF461 at 126.196 kb on + strand, within GFF461 at 126.196 kb on + strand, within GFF461 at 126.197 kb on - strand, within GFF461 at 126.424 kb on + strand, within GFF461 at 126.425 kb on - strand, within GFF461
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 123,641 + GFF456 0.84 +0.6 123,641 + GFF456 0.84 +0.0 123,642 - GFF456 0.85 -0.1 123,803 - GFF457 0.20 -0.6 124,109 + -0.3 124,109 + +1.1 124,212 + GFF458 0.26 +0.0 124,212 + GFF458 0.26 +0.1 124,640 + GFF459 0.14 +0.4 124,641 - GFF459 0.14 -0.0 124,932 - GFF459 0.43 +0.2 125,018 + GFF459 0.52 -0.1 125,019 - GFF459 0.52 -0.6 125,342 + GFF459 0.85 +0.0 125,342 + GFF459 0.85 +0.7 125,343 - GFF459 0.85 +1.0 125,528 + +0.6 125,528 + +0.0 125,555 - -0.3 125,560 + +1.4 125,561 - +0.3 125,561 - -0.6 125,561 - -1.3 125,561 - -0.7 125,894 - GFF460 0.63 -0.7 126,038 - +1.0 126,188 - GFF461 0.13 -0.6 126,196 + GFF461 0.14 +0.3 126,196 + GFF461 0.14 +0.4 126,197 - GFF461 0.14 -0.4 126,424 + GFF461 0.38 +0.2 126,425 - GFF461 0.38 +0.2
Or see this region's nucleotide sequence