Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4538

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
1,463,875	+		GFF4537	0.18	+0.8
1,463,875	+		GFF4537	0.18	+0.1
1,463,875	+		GFF4537	0.18	+0.4
1,463,875	+		GFF4537	0.18	+0.1
1,463,876	-		GFF4537	0.18	+0.6
1,463,876	-		GFF4537	0.18	+0.2
1,463,876	-		GFF4537	0.18	+0.2
1,463,914	+		GFF4537	0.22	+0.6
1,463,920	+		GFF4537	0.22	+0.2
1,463,920	+		GFF4537	0.22	-0.3
1,463,920	+		GFF4537	0.22	+0.2
1,463,920	+		GFF4537	0.22	-0.5
1,463,920	+		GFF4537	0.22	-0.5
1,463,921	-		GFF4537	0.22	+1.0
1,463,921	-		GFF4537	0.22	-0.3
1,463,921	-		GFF4537	0.22	-0.0
1,463,921	-		GFF4537	0.22	+0.3
1,463,921	-		GFF4537	0.22	+0.6
1,463,921	-		GFF4537	0.22	-0.1
1,463,921	-		GFF4537	0.22	-1.0
1,463,921	-		GFF4537	0.22	+0.1
1,463,921	-		GFF4537	0.22	+0.4
1,463,921	-		GFF4537	0.22	+0.3
1,463,921	-		GFF4537	0.22	-0.6
1,464,210	+		GFF4537	0.48	-2.5
1,464,210	+		GFF4537	0.48	-0.1
1,464,397	+		GFF4537	0.65	-0.5
1,464,397	+		GFF4537	0.65	+1.0
1,464,398	-		GFF4537	0.65	-0.1
1,464,398	-		GFF4537	0.65	-0.6
1,464,398	-		GFF4537	0.65	-1.0
1,464,454	+		GFF4537	0.70	-0.3
1,464,454	+		GFF4537	0.70	-0.1
1,464,455	-		GFF4537	0.70	-0.4
1,464,455	-		GFF4537	0.70	+0.1
1,464,455	-		GFF4537	0.70	+0.5
1,464,849	+				+1.2
1,464,849	+				+0.4
1,464,849	+				-0.0
1,464,850	-				+1.0
1,465,288	+		GFF4538	0.60	-0.6
1,465,288	+		GFF4538	0.60	+1.7
1,465,288	+		GFF4538	0.60	+0.4
1,465,289	-		GFF4538	0.60	+0.4
1,465,338	+		GFF4538	0.67	-0.5
1,465,477	-		GFF4538	0.84	+0.2
1,465,866	-				-1.5
1,465,876	+				-0.3
1,465,876	+				+0.0
1,465,876	+				+0.3
1,465,877	-				-0.2
1,465,877	-				+0.4
1,465,877	-				-0.0
1,465,884	+				+0.8
1,465,885	-				-0.1
1,465,885	-				-0.0
1,465,885	-				-1.4
1,465,885	-				-0.4
1,465,896	+				+1.4
1,465,896	+				+0.1
1,465,896	+				-1.0
1,466,317	+		GFF4539	0.43	-0.1
1,466,317	+		GFF4539	0.43	-0.3
1,466,317	+		GFF4539	0.43	-1.0
1,466,317	+		GFF4539	0.43	+0.1
1,466,318	-		GFF4539	0.43	-0.0
1,466,318	-		GFF4539	0.43	+0.5
1,466,318	-		GFF4539	0.43	+1.0
1,466,318	-		GFF4539	0.43	-0.3
1,466,318	-		GFF4539	0.43	-0.0
1,466,531	-		GFF4539	0.63	-0.4
1,466,531	-		GFF4539	0.63	+0.2