Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF448 and GFF449 are separated by 2 nucleotides GFF449 and GFF450 are separated by 76 nucleotides GFF450 and GFF451 are separated by 100 nucleotides GFF451 and GFF452 are separated by 11 nucleotides GFF452 and GFF453 are separated by 34 nucleotides
GFF448 - hypothetical protein, at 117,176 to 118,393
GFF448
GFF449 - hypothetical protein, at 118,396 to 118,677
GFF449
GFF450 - PhnB protein, at 118,754 to 119,119
GFF450
GFF451 - PhnB protein, at 119,220 to 119,651
GFF451
GFF452 - FIG00454722: hypothetical protein, at 119,663 to 120,205
GFF452
GFF453 - Glyoxalase family protein, at 120,240 to 120,650
GFF453
Position (kb) 119
120 Strain fitness (log2 ratio) -1
0
1 at 118.247 kb on + strand, within GFF448 at 118.247 kb on + strand, within GFF448 at 118.266 kb on - strand, within GFF448 at 118.266 kb on - strand, within GFF448 at 118.266 kb on - strand, within GFF448 at 118.361 kb on + strand at 118.361 kb on + strand at 118.362 kb on - strand at 118.421 kb on + strand at 118.421 kb on + strand at 118.443 kb on - strand, within GFF449 at 118.582 kb on + strand, within GFF449 at 118.582 kb on + strand, within GFF449 at 118.583 kb on - strand, within GFF449 at 118.583 kb on - strand, within GFF449 at 118.583 kb on - strand, within GFF449 at 118.583 kb on - strand, within GFF449 at 118.829 kb on + strand, within GFF450 at 118.829 kb on + strand, within GFF450 at 118.830 kb on - strand, within GFF450 at 119.314 kb on - strand, within GFF451 at 119.394 kb on + strand, within GFF451 at 119.463 kb on + strand, within GFF451 at 119.463 kb on + strand, within GFF451 at 119.464 kb on - strand, within GFF451 at 119.571 kb on + strand, within GFF451 at 119.834 kb on + strand, within GFF452 at 119.834 kb on + strand, within GFF452 at 119.835 kb on - strand, within GFF452 at 119.868 kb on - strand, within GFF452 at 119.868 kb on - strand, within GFF452 at 120.567 kb on + strand, within GFF453 at 120.568 kb on - strand, within GFF453
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 118,247 + GFF448 0.88 -0.4 118,247 + GFF448 0.88 -0.3 118,266 - GFF448 0.89 +0.2 118,266 - GFF448 0.89 -0.6 118,266 - GFF448 0.89 -0.8 118,361 + +1.5 118,361 + -1.5 118,362 - -0.0 118,421 + +0.5 118,421 + +0.1 118,443 - GFF449 0.17 -0.1 118,582 + GFF449 0.66 +0.9 118,582 + GFF449 0.66 -1.0 118,583 - GFF449 0.66 -0.4 118,583 - GFF449 0.66 -0.3 118,583 - GFF449 0.66 +0.7 118,583 - GFF449 0.66 +0.0 118,829 + GFF450 0.20 -0.2 118,829 + GFF450 0.20 +0.3 118,830 - GFF450 0.21 -0.3 119,314 - GFF451 0.22 +0.4 119,394 + GFF451 0.40 -1.1 119,463 + GFF451 0.56 +0.9 119,463 + GFF451 0.56 +0.2 119,464 - GFF451 0.56 +1.0 119,571 + GFF451 0.81 +0.7 119,834 + GFF452 0.31 -1.0 119,834 + GFF452 0.31 -0.3 119,835 - GFF452 0.32 +0.0 119,868 - GFF452 0.38 -0.2 119,868 - GFF452 0.38 +0.0 120,567 + GFF453 0.80 -0.4 120,568 - GFF453 0.80 -0.2
Or see this region's nucleotide sequence