Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4363

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
1,292,588	+		GFF4362	0.66	+0.3
1,292,588	+		GFF4362	0.66	-0.2
1,292,589	-		GFF4362	0.66	-1.0
1,292,589	-		GFF4362	0.66	-0.2
1,292,702	+		GFF4362	0.90	+0.4
1,292,702	+		GFF4362	0.90	-0.1
1,292,703	-				-0.2
1,292,758	-				+0.4
1,292,758	-				+0.1
1,292,762	+				+0.1
1,292,762	+				-0.2
1,292,762	+				-0.8
1,292,762	+				-0.2
1,292,763	-				+1.0
1,292,763	-				-0.2
1,292,763	-				-0.5
1,292,797	+				+0.7
1,292,797	+				-0.2
1,292,797	+				-0.1
1,292,798	-				+0.5
1,292,798	-				+0.4
1,292,894	+				-0.0
1,292,919	+				-0.2
1,292,920	-				+0.8
1,292,980	+				+0.7
1,293,109	+				+0.1
1,293,109	+				+0.4
1,293,110	-				+0.7
1,293,145	+				+0.6
1,293,207	+				+0.1
1,293,207	+				-0.3
1,293,207	+				-1.1
1,293,208	-				+0.3
1,293,208	-				-1.0
1,293,208	-				+0.4
1,293,208	-				-2.5
1,293,248	+				-0.1
1,293,248	+				+1.1
1,293,249	-				-0.0
1,293,249	-				+0.4
1,293,249	-				-0.7
1,293,249	-				-0.2
1,293,249	-				-0.0
1,293,525	+				+0.1
1,293,525	+				+0.8
1,293,525	+				+0.5
1,293,525	+				-0.6
1,293,526	-				-0.4
1,293,526	-				-0.1
1,293,529	+				-0.1
1,293,530	-				+0.2
1,293,640	+		GFF4363	0.11	+0.6
1,293,640	+		GFF4363	0.11	+0.3
1,293,640	+		GFF4363	0.11	+0.3
1,293,640	+		GFF4363	0.11	+0.2
1,293,640	+		GFF4363	0.11	+0.5
1,293,640	+		GFF4363	0.11	+0.8
1,293,641	-		GFF4363	0.11	+0.3
1,293,641	-		GFF4363	0.11	+0.2
1,293,641	-		GFF4363	0.11	+1.3
1,293,641	-		GFF4363	0.11	-0.3
1,293,641	-		GFF4363	0.11	-0.1
1,293,829	+		GFF4363	0.30	-1.0
1,293,829	+		GFF4363	0.30	+0.4
1,293,829	+		GFF4363	0.30	-0.5
1,293,830	-		GFF4363	0.30	+1.4
1,293,830	-		GFF4363	0.30	+0.5
1,293,998	-		GFF4363	0.47	+0.6
1,294,123	+		GFF4363	0.59	-1.0
1,294,123	+		GFF4363	0.59	+0.1
1,294,124	-		GFF4363	0.59	+0.3
1,294,350	-		GFF4363	0.82	-0.3
1,294,538	+				+0.2
1,294,539	-				+0.8
1,294,652	-				-0.3
1,294,652	-				-0.2
1,294,652	-				-0.1
1,294,698	+				+0.2
1,294,698	+				-0.2
1,294,698	+				-0.0
1,294,698	+				-0.5
1,294,698	+				-0.1
1,294,699	-				-0.1
1,294,699	-				-0.9
1,294,699	-				-0.4
1,294,699	-				+0.1
1,294,798	+				-2.0
1,294,799	-				-0.1
1,294,799	-				+0.3
1,294,799	-				+0.3
1,294,799	-				-0.2
1,294,799	-				-0.2
1,294,849	+				-1.2
1,295,122	-		GFF4364	0.12	+0.3
1,295,136	+		GFF4364	0.14	+0.4
1,295,136	+		GFF4364	0.14	+1.7
1,295,136	+		GFF4364	0.14	-0.6
1,295,199	+		GFF4364	0.23	-0.5
1,295,200	-		GFF4364	0.23	+0.3
1,295,200	-		GFF4364	0.23	-0.1
1,295,251	+		GFF4364	0.30	-0.1
1,295,352	+		GFF4364	0.43	-0.1
1,295,353	-		GFF4364	0.44	+0.6
1,295,444	-		GFF4364	0.56	+0.2
1,295,490	+		GFF4364	0.62	+0.6
1,295,490	+		GFF4364	0.62	-0.6
1,295,491	-		GFF4364	0.62	+0.3
1,295,491	-		GFF4364	0.62	+0.5
1,295,491	-		GFF4364	0.62	-0.6
1,295,491	-		GFF4364	0.62	+0.2
1,295,491	-		GFF4364	0.62	+1.0
1,295,491	-		GFF4364	0.62	+1.1
1,295,527	+		GFF4364	0.67	-0.1
1,295,527	+		GFF4364	0.67	+0.6
1,295,527	+		GFF4364	0.67	+1.0
1,295,527	+		GFF4364	0.67	-1.1
1,295,527	+		GFF4364	0.67	+0.2
1,295,528	-		GFF4364	0.67	+0.3
1,295,528	-		GFF4364	0.67	+0.8
1,295,528	-		GFF4364	0.67	-0.2
1,295,528	-		GFF4364	0.67	-0.3
1,295,528	-		GFF4364	0.67	-1.0
1,295,528	-		GFF4364	0.67	-0.7
1,295,528	-		GFF4364	0.67	+0.2
1,295,528	-		GFF4364	0.67	-0.0
1,295,528	-		GFF4364	0.67	-0.0