Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4281

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
1,206,173	+		GFF4280	0.52	-1.8
1,206,173	+		GFF4280	0.52	-0.8
1,206,174	-		GFF4280	0.52	-2.0
1,206,174	-		GFF4280	0.52	-0.6
1,206,274	+		GFF4280	0.57	+0.6
1,206,275	+		GFF4280	0.58	-0.4
1,206,275	+		GFF4280	0.58	-0.7
1,206,275	+		GFF4280	0.58	+0.4
1,206,275	+		GFF4280	0.58	-0.4
1,206,275	+		GFF4280	0.58	+1.3
1,206,275	+		GFF4280	0.58	-1.0
1,206,275	+		GFF4280	0.58	-1.1
1,206,276	-		GFF4280	0.58	-0.9
1,206,276	-		GFF4280	0.58	-1.4
1,206,276	-		GFF4280	0.58	-1.1
1,206,276	-		GFF4280	0.58	-1.0
1,206,293	+		GFF4280	0.59	-0.3
1,206,293	+		GFF4280	0.59	-0.4
1,206,293	+		GFF4280	0.59	-2.3
1,206,293	+		GFF4280	0.59	-0.8
1,206,293	+		GFF4280	0.59	-0.0
1,206,293	+		GFF4280	0.59	+1.1
1,206,294	-		GFF4280	0.59	-1.8
1,206,294	-		GFF4280	0.59	-1.6
1,206,294	-		GFF4280	0.59	-3.3
1,206,294	-		GFF4280	0.59	-0.6
1,206,294	-		GFF4280	0.59	-1.9
1,206,294	-		GFF4280	0.59	-1.6
1,206,294	-		GFF4280	0.59	-2.6
1,206,294	-		GFF4280	0.59	+0.2
1,206,294	-		GFF4280	0.59	-1.6
1,206,294	-		GFF4280	0.59	-1.6
1,206,294	-		GFF4280	0.59	-2.1
1,206,377	+		GFF4280	0.64	-0.2
1,206,377	+		GFF4280	0.64	-2.3
1,206,377	+		GFF4280	0.64	-0.3
1,206,377	+		GFF4280	0.64	-1.9
1,206,377	+		GFF4280	0.64	-0.8
1,206,377	+		GFF4280	0.64	-0.5
1,206,377	+		GFF4280	0.64	-1.0
1,206,378	-		GFF4280	0.64	-3.6
1,206,378	-		GFF4280	0.64	-1.6
1,206,378	-		GFF4280	0.64	+1.0
1,206,378	-		GFF4280	0.64	-1.3
1,206,378	-		GFF4280	0.64	+1.6
1,206,413	+		GFF4280	0.66	-2.0
1,206,413	+		GFF4280	0.66	-2.2
1,206,413	+		GFF4280	0.66	-0.1
1,206,413	+		GFF4280	0.66	-0.6
1,206,413	+		GFF4280	0.66	-0.2
1,206,413	+		GFF4280	0.66	+0.3
1,206,413	+		GFF4280	0.66	-0.5
1,206,413	+		GFF4280	0.66	-0.3
1,206,413	+		GFF4280	0.66	+0.5
1,206,414	-		GFF4280	0.66	-1.2
1,206,414	-		GFF4280	0.66	-2.0
1,206,414	-		GFF4280	0.66	-0.3
1,206,414	-		GFF4280	0.66	-1.5
1,206,414	-		GFF4280	0.66	-1.2
1,206,414	-		GFF4280	0.66	-0.7
1,206,414	-		GFF4280	0.66	-0.0
1,206,414	-		GFF4280	0.66	-0.0
1,206,414	-		GFF4280	0.66	-0.0
1,206,464	+		GFF4280	0.69	+0.2
1,206,464	+		GFF4280	0.69	-1.4
1,206,465	-		GFF4280	0.69	-2.0
1,206,465	-		GFF4280	0.69	-1.2
1,206,482	+		GFF4280	0.70	-1.5
1,206,482	+		GFF4280	0.70	+0.4
1,206,482	+		GFF4280	0.70	+0.4
1,206,482	+		GFF4280	0.70	-1.7
1,206,482	+		GFF4280	0.70	-1.0
1,206,483	-		GFF4280	0.70	-3.4
1,206,483	-		GFF4280	0.70	-0.0
1,206,602	+		GFF4280	0.77	+0.4
1,206,603	-		GFF4280	0.77	-1.8
1,206,794	+		GFF4280	0.88	+0.4
1,206,794	+		GFF4280	0.88	+1.1
1,206,795	-		GFF4280	0.88	+0.0
1,206,795	-		GFF4280	0.88	-0.4
1,206,795	-		GFF4280	0.88	-0.1
1,206,842	+				+0.2
1,206,842	+				+0.1
1,206,842	+				+0.9
1,206,842	+				-0.0
1,206,842	+				-0.6
1,206,842	+				+0.3
1,206,842	+				-0.4
1,206,842	+				+0.0
1,206,843	-				+0.3
1,206,843	-				+1.4
1,206,843	-				-0.1
1,206,843	-				+0.3
1,206,843	-				+1.0
1,206,843	-				-0.5
1,206,967	+				-1.3
1,206,967	+				-1.0
1,206,967	+				-0.7
1,206,967	+				-0.4
1,206,967	+				-0.8
1,206,967	+				+0.2
1,206,967	+				-1.3
1,206,967	+				-0.4
1,206,967	+				-0.8
1,206,967	+				-0.0
1,206,967	+				-0.1
1,206,967	+				-0.2
1,206,967	+				+1.1
1,206,967	+				+0.2
1,206,967	+				-0.8
1,206,968	-				-0.0
1,206,968	-				-0.9
1,206,968	-				-0.4
1,206,968	-				+0.4
1,206,968	-				+0.6
1,206,968	-				-0.4
1,206,968	-				+0.5
1,206,968	-				-0.0
1,206,968	-				+0.5
1,206,968	-				+0.2
1,206,968	-				-0.1
1,206,968	-				+0.1
1,206,968	-				-0.4
1,206,968	-				+1.0
1,206,968	-				-1.3
1,206,968	-				-0.2
1,207,012	+				-1.0
1,207,012	+				-0.4
1,207,012	+				+0.5
1,207,012	+				-0.0
1,207,013	-				-1.8
1,207,013	-				-1.6
1,207,013	-				-0.7
1,207,554	-		GFF4281	0.34	+1.0
1,207,554	-		GFF4281	0.34	+0.2
1,207,554	-		GFF4281	0.34	+1.0
1,207,554	-		GFF4281	0.34	-0.8
1,207,554	-		GFF4281	0.34	+0.6
1,207,572	-		GFF4281	0.35	-0.1
1,207,796	+		GFF4281	0.49	-0.4
1,207,967	+		GFF4281	0.61	-1.5
1,207,967	+		GFF4281	0.61	-0.7
1,207,967	+		GFF4281	0.61	-2.2
1,207,967	+		GFF4281	0.61	-0.6
1,207,967	+		GFF4281	0.61	+1.0
1,207,967	+		GFF4281	0.61	-0.5
1,207,967	+		GFF4281	0.61	+0.3
1,207,968	-		GFF4281	0.61	-1.6
1,207,968	-		GFF4281	0.61	-2.3
1,207,968	-		GFF4281	0.61	-0.1
1,207,968	-		GFF4281	0.61	-0.7
1,207,968	-		GFF4281	0.61	-0.9
1,207,968	-		GFF4281	0.61	-1.2
1,208,210	+		GFF4281	0.76	-0.0
1,208,210	+		GFF4281	0.76	+0.4
1,208,211	-		GFF4281	0.76	+0.4
1,208,384	+		GFF4281	0.88	+0.1
1,208,384	+		GFF4281	0.88	-0.6
1,208,385	-		GFF4281	0.88	+1.4
1,208,385	-		GFF4281	0.88	-0.2
1,208,516	+				+0.8
1,208,516	+				-1.6
1,208,516	+				+1.0
1,208,517	-				-0.5
1,208,574	-				-0.1
1,208,639	+				+0.1
1,208,640	-				+0.7
1,208,651	+				+0.2
1,208,686	+				+0.0
1,208,687	-				-0.7
1,208,713	+				+0.2
1,208,714	-				+1.0
1,208,714	-				-0.4
1,208,714	-				+0.2
1,208,714	-				-0.4
1,208,714	-				-0.1
1,208,752	+				-0.7
1,208,752	+				-0.1
1,208,752	+				+0.4
1,208,752	+				-0.2
1,208,752	+				+0.2
1,208,752	+				-2.2
1,208,752	+				+0.2
1,208,752	+				+1.0
1,208,752	+				+0.7
1,208,752	+				+0.2
1,208,752	+				+1.4
1,208,753	-				+1.0
1,208,753	-				+0.9
1,208,753	-				+0.4
1,208,753	-				+0.3
1,208,937	+		GFF4282	0.16	-1.3
1,208,937	+		GFF4282	0.16	+0.6
1,208,937	+		GFF4282	0.16	+0.1
1,208,937	+		GFF4282	0.16	-0.2
1,208,937	+		GFF4282	0.16	-1.2
1,208,938	-		GFF4282	0.16	-0.5
1,208,938	-		GFF4282	0.16	-0.7
1,208,938	-		GFF4282	0.16	-1.3
1,208,938	-		GFF4282	0.16	-1.2
1,209,458	+		GFF4282	0.60	+0.8
1,209,458	+		GFF4282	0.60	+0.3
1,209,459	-		GFF4282	0.60	-0.5
1,209,533	+		GFF4282	0.67	-0.1
1,209,533	+		GFF4282	0.67	-0.2
1,209,533	+		GFF4282	0.67	+1.5
1,209,533	+		GFF4282	0.67	+0.4
1,209,533	+		GFF4282	0.67	-0.0
1,209,534	-		GFF4282	0.67	+0.3