Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4256

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
1,178,720	+				-1.1
1,178,721	-				-0.2
1,178,721	-				-1.6
1,178,753	+				-1.6
1,178,753	+				-0.8
1,178,753	+				-0.5
1,178,753	+				-0.3
1,178,754	-				+0.4
1,178,754	-				-0.7
1,178,754	-				+0.4
1,179,089	+		GFF4255	0.37	-0.8
1,179,089	+		GFF4255	0.37	-0.9
1,179,089	+		GFF4255	0.37	-0.6
1,179,089	+		GFF4255	0.37	-0.6
1,179,089	+		GFF4255	0.37	-0.6
1,179,090	-		GFF4255	0.37	-0.9
1,179,090	-		GFF4255	0.37	+1.0
1,179,090	-		GFF4255	0.37	+0.8
1,179,090	-		GFF4255	0.37	-0.9
1,179,090	-		GFF4255	0.37	-0.6
1,179,090	-		GFF4255	0.37	+0.4
1,179,305	+		GFF4255	0.63	+1.6
1,179,306	-		GFF4255	0.63	-0.9
1,179,306	-		GFF4255	0.63	-1.3
1,179,306	-		GFF4255	0.63	-0.6
1,179,306	-		GFF4255	0.63	-0.7
1,179,407	+		GFF4255	0.75	-0.3
1,179,431	+		GFF4255	0.78	+2.0
1,179,431	+		GFF4255	0.78	-0.5
1,179,432	-		GFF4255	0.78	-1.0
1,179,432	-		GFF4255	0.78	-0.9
1,179,432	-		GFF4255	0.78	-1.0
1,179,432	-		GFF4255	0.78	-0.9
1,179,432	-		GFF4255	0.78	+0.3
1,179,432	-		GFF4255	0.78	-1.1
1,179,895	+		GFF4256	0.16	-0.2
1,180,195	+		GFF4256	0.34	-0.1
1,180,195	+		GFF4256	0.34	+0.3
1,180,195	+		GFF4256	0.34	+0.7
1,180,196	-		GFF4256	0.34	-0.3
1,180,421	-		GFF4256	0.48	-0.3
1,180,421	-		GFF4256	0.48	-1.3
1,180,421	-		GFF4256	0.48	-0.7
1,180,421	-		GFF4256	0.48	-0.4
1,180,421	-		GFF4256	0.48	+1.0
1,180,471	+		GFF4256	0.51	+0.7
1,180,471	+		GFF4256	0.51	+0.4
1,180,471	+		GFF4256	0.51	+0.1
1,180,471	+		GFF4256	0.51	-1.1
1,180,471	+		GFF4256	0.51	-0.6
1,180,471	+		GFF4256	0.51	-1.8
1,180,472	-		GFF4256	0.51	-0.0
1,180,472	-		GFF4256	0.51	+0.3
1,180,472	-		GFF4256	0.51	+0.4
1,180,472	-		GFF4256	0.51	-1.0
1,180,472	-		GFF4256	0.51	+0.4
1,180,472	-		GFF4256	0.51	+0.1
1,180,472	-		GFF4256	0.51	-0.4
1,180,472	-		GFF4256	0.51	+0.2
1,180,507	+		GFF4256	0.53	-0.7
1,180,507	+		GFF4256	0.53	+0.1
1,180,576	+		GFF4256	0.58	+0.6
1,180,577	-		GFF4256	0.58	+0.6
1,180,577	-		GFF4256	0.58	-0.3
1,180,615	+		GFF4256	0.60	-0.4
1,180,631	-		GFF4256	0.61	+0.4
1,180,856	-		GFF4256	0.75	+0.0
1,180,888	+		GFF4256	0.77	-0.3
1,180,889	-		GFF4256	0.77	-0.2
1,180,906	+		GFF4256	0.78	-0.7
1,180,907	-		GFF4256	0.78	-0.0
1,180,907	-		GFF4256	0.78	+0.5
1,181,071	+		GFF4256	0.88	+1.4
1,181,472	+		GFF4257	0.26	+0.4
1,181,472	+		GFF4257	0.26	+1.0
1,181,472	+		GFF4257	0.26	+0.3
1,181,473	-		GFF4257	0.26	+0.6
1,181,473	-		GFF4257	0.26	+0.3
1,181,535	+		GFF4257	0.34	+1.0
1,181,536	-		GFF4257	0.34	+0.1
1,181,697	+		GFF4257	0.55	+0.3
1,181,697	+		GFF4257	0.55	+0.3
1,181,697	+		GFF4257	0.55	+0.5
1,181,697	+		GFF4257	0.55	-0.0
1,181,697	+		GFF4257	0.55	+0.3
1,181,698	-		GFF4257	0.55	+2.1
1,181,700	+		GFF4257	0.56	+1.0
1,181,700	+		GFF4257	0.56	+0.7
1,181,700	+		GFF4257	0.56	+0.4
1,181,700	+		GFF4257	0.56	+0.6
1,181,700	+		GFF4257	0.56	+1.0
1,181,701	-		GFF4257	0.56	+1.3
1,181,701	-		GFF4257	0.56	+0.0
1,181,814	+		GFF4257	0.70	+1.1
1,181,814	+		GFF4257	0.70	+0.4
1,181,814	+		GFF4257	0.70	+2.7
1,182,006	+				-0.6
1,182,006	+				+0.3
1,182,006	+				+0.4
1,182,006	+				-0.2
1,182,006	+				+0.5
1,182,006	+				+0.4
1,182,006	+				-0.0
1,182,006	+				+0.7
1,182,006	+				-1.2
1,182,006	+				+1.0
1,182,006	+				+0.3
1,182,007	-				-0.2
1,182,007	-				+0.7
1,182,007	-				+1.1
1,182,007	-				-0.4
1,182,007	-				-0.8
1,182,007	-				+0.6
1,182,007	-				+0.6
1,182,007	-				+0.3
1,182,007	-				-0.2
1,182,007	-				+0.3
1,182,007	-				+0.5
1,182,007	-				+1.3
1,182,007	-				-0.3
1,182,007	-				+0.3
1,182,060	-				+0.0
1,182,069	+				+0.0
1,182,069	+				-0.4
1,182,069	+				-2.0
1,182,070	-				-0.0
1,182,070	-				+0.0
1,182,070	-				+0.1
1,182,070	-				-0.0
1,182,070	-				-0.6
1,182,070	-				-0.1
1,182,164	+				-0.8
1,182,164	+				-0.8
1,182,165	-				-0.3
1,182,202	+				-0.3
1,182,202	+				+0.6
1,182,202	+				-0.0
1,182,202	+				-0.5
1,182,203	-				-0.6
1,182,203	-				+0.4
1,182,203	-				-0.3
1,182,203	-				-0.8
1,182,203	-				-0.3
1,182,203	-				+0.3
1,182,203	-				+0.1
1,182,259	+		GFF4258	0.12	+0.1
1,182,259	+		GFF4258	0.12	+0.3