Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4136

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
1,047,544	+		GFF4135	0.33	-1.2
1,047,544	+		GFF4135	0.33	-0.5
1,047,545	-		GFF4135	0.33	-0.0
1,047,545	-		GFF4135	0.33	-1.0
1,047,650	-		GFF4135	0.41	+0.7
1,047,650	-		GFF4135	0.41	-1.8
1,047,686	-		GFF4135	0.43	-0.6
1,047,739	+		GFF4135	0.47	+0.1
1,047,739	+		GFF4135	0.47	-0.1
1,047,739	+		GFF4135	0.47	+0.8
1,047,739	+		GFF4135	0.47	-0.6
1,047,739	+		GFF4135	0.47	-1.2
1,047,740	-		GFF4135	0.47	-1.0
1,047,740	-		GFF4135	0.47	+1.2
1,047,742	+		GFF4135	0.47	+0.9
1,047,743	-		GFF4135	0.47	-1.0
1,047,743	-		GFF4135	0.47	-0.2
1,047,776	-		GFF4135	0.49	+0.3
1,047,823	+		GFF4135	0.53	-0.1
1,047,823	+		GFF4135	0.53	-1.0
1,047,823	+		GFF4135	0.53	-0.0
1,047,824	-		GFF4135	0.53	-0.5
1,047,853	+		GFF4135	0.55	+0.2
1,048,021	+		GFF4135	0.66	+0.1
1,048,021	+		GFF4135	0.66	-0.3
1,048,021	+		GFF4135	0.66	+1.6
1,048,021	+		GFF4135	0.66	-0.3
1,048,022	-		GFF4135	0.66	-0.8
1,048,084	+		GFF4135	0.71	+0.0
1,048,159	+		GFF4135	0.76	+0.3
1,048,159	+		GFF4135	0.76	+0.6
1,048,159	+		GFF4135	0.76	+0.7
1,048,160	-		GFF4135	0.76	+0.3
1,048,160	-		GFF4135	0.76	+0.5
1,048,160	-		GFF4135	0.76	+0.8
1,048,160	-		GFF4135	0.76	+0.0
1,048,160	-		GFF4135	0.76	+0.0
1,048,160	-		GFF4135	0.76	-1.2
1,048,162	+		GFF4135	0.76	-0.3
1,048,162	+		GFF4135	0.76	-0.3
1,048,198	+		GFF4135	0.79	-0.2
1,048,198	+		GFF4135	0.79	-1.1
1,048,198	+		GFF4135	0.79	+0.6
1,048,199	-		GFF4135	0.79	-0.8
1,048,199	-		GFF4135	0.79	+0.0
1,048,255	+		GFF4135	0.83	-1.6
1,048,372	+				+0.0
1,048,372	+				+1.4
1,048,372	+				-0.3
1,048,372	+				+0.0
1,048,373	-				-0.9
1,048,373	-				-0.5
1,048,373	-				-0.3
1,048,373	-				+0.0
1,048,403	-				-0.9
1,048,718	+		GFF4136	0.32	-0.1
1,048,718	+		GFF4136	0.32	-0.9
1,048,718	+		GFF4136	0.32	-0.7
1,048,718	+		GFF4136	0.32	+0.1
1,048,719	-		GFF4136	0.32	-0.3
1,048,719	-		GFF4136	0.32	-0.8
1,048,719	-		GFF4136	0.32	-0.7
1,048,719	-		GFF4136	0.32	-0.5
1,048,719	-		GFF4136	0.32	+0.4
1,048,736	+		GFF4136	0.35	-0.7
1,048,736	+		GFF4136	0.35	+0.6
1,048,737	-		GFF4136	0.35	+0.3
1,048,737	-		GFF4136	0.35	+0.2
1,048,737	-		GFF4136	0.35	-0.1
1,048,787	+		GFF4136	0.43	+0.4
1,048,788	-		GFF4136	0.43	-0.1
1,048,959	-		GFF4136	0.70	-0.8
1,049,038	+		GFF4136	0.83	+0.7
1,049,360	+				+0.1
1,049,360	+				-0.8
1,049,360	+				-0.3
1,049,361	-				+1.1
1,049,519	+		GFF4138	0.21	-0.3
1,049,585	+		GFF4138	0.28	-0.2
1,049,667	-		GFF4138	0.37	-1.2