Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF412 and GFF413 are separated by 34 nucleotides GFF413 and GFF414 are separated by 34 nucleotides
GFF412 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 80,491 to 82,287
GFF412
GFF413 - FIG00581832: hypothetical protein, at 82,322 to 82,759
GFF413
GFF414 - Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 82,794 to 85,193
GFF414
Position (kb) 82
83 Strain fitness (log2 ratio) -2
-1
0
1
2 at 81.427 kb on + strand, within GFF412 at 81.446 kb on - strand, within GFF412 at 81.712 kb on + strand, within GFF412 at 81.712 kb on + strand, within GFF412 at 81.757 kb on + strand, within GFF412 at 81.757 kb on + strand, within GFF412 at 81.757 kb on + strand, within GFF412 at 81.758 kb on - strand, within GFF412 at 81.758 kb on - strand, within GFF412 at 81.758 kb on - strand, within GFF412 at 81.784 kb on + strand, within GFF412 at 81.785 kb on - strand, within GFF412 at 81.814 kb on + strand, within GFF412 at 81.814 kb on + strand, within GFF412 at 81.815 kb on - strand, within GFF412 at 81.815 kb on - strand, within GFF412 at 81.815 kb on - strand, within GFF412 at 81.815 kb on - strand, within GFF412 at 82.063 kb on + strand, within GFF412 at 82.063 kb on + strand, within GFF412 at 82.064 kb on - strand, within GFF412 at 82.097 kb on - strand, within GFF412 at 82.162 kb on + strand at 82.163 kb on - strand at 82.163 kb on - strand at 82.192 kb on + strand at 82.192 kb on + strand at 82.192 kb on + strand at 82.285 kb on + strand at 82.469 kb on + strand, within GFF413 at 82.469 kb on + strand, within GFF413 at 82.617 kb on - strand, within GFF413 at 82.658 kb on + strand, within GFF413 at 83.023 kb on - strand at 83.023 kb on - strand at 83.023 kb on - strand at 83.106 kb on + strand, within GFF414 at 83.106 kb on + strand, within GFF414 at 83.157 kb on - strand, within GFF414 at 83.251 kb on - strand, within GFF414 at 83.445 kb on + strand, within GFF414 at 83.445 kb on + strand, within GFF414 at 83.446 kb on - strand, within GFF414 at 83.592 kb on + strand, within GFF414 at 83.592 kb on + strand, within GFF414 at 83.724 kb on + strand, within GFF414 at 83.724 kb on + strand, within GFF414 at 83.724 kb on + strand, within GFF414
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 81,427 + GFF412 0.52 -0.3 81,446 - GFF412 0.53 -0.2 81,712 + GFF412 0.68 +0.7 81,712 + GFF412 0.68 -0.4 81,757 + GFF412 0.70 -1.1 81,757 + GFF412 0.70 +0.2 81,757 + GFF412 0.70 -0.4 81,758 - GFF412 0.71 -0.8 81,758 - GFF412 0.71 -0.2 81,758 - GFF412 0.71 -0.9 81,784 + GFF412 0.72 -0.2 81,785 - GFF412 0.72 -0.3 81,814 + GFF412 0.74 -1.3 81,814 + GFF412 0.74 -0.4 81,815 - GFF412 0.74 +0.2 81,815 - GFF412 0.74 +0.3 81,815 - GFF412 0.74 -0.1 81,815 - GFF412 0.74 +0.0 82,063 + GFF412 0.87 +0.7 82,063 + GFF412 0.87 -1.0 82,064 - GFF412 0.88 +0.9 82,097 - GFF412 0.89 +0.0 82,162 + -1.3 82,163 - +0.0 82,163 - +0.6 82,192 + -0.3 82,192 + -1.3 82,192 + +1.4 82,285 + -0.1 82,469 + GFF413 0.34 -1.1 82,469 + GFF413 0.34 +0.2 82,617 - GFF413 0.67 +0.1 82,658 + GFF413 0.77 -0.6 83,023 - +0.4 83,023 - -0.1 83,023 - -0.3 83,106 + GFF414 0.13 +0.4 83,106 + GFF414 0.13 -2.5 83,157 - GFF414 0.15 -1.8 83,251 - GFF414 0.19 +1.0 83,445 + GFF414 0.27 +0.2 83,445 + GFF414 0.27 -0.0 83,446 - GFF414 0.27 +2.0 83,592 + GFF414 0.33 -1.1 83,592 + GFF414 0.33 +0.0 83,724 + GFF414 0.39 +0.3 83,724 + GFF414 0.39 +0.3 83,724 + GFF414 0.39 +0.2
Or see this region's nucleotide sequence