Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3970

Experiment: Ying_sugar7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3969 and GFF3970 are separated by 64 nucleotidesGFF3970 and GFF3971 are separated by 203 nucleotidesGFF3971 and GFF3972 are separated by 222 nucleotides GFF3969 - Conserved domain protein, at 884,993 to 886,045 GFF3969 GFF3970 - Adenylate cyclase (EC 4.6.1.1), at 886,110 to 887,879 GFF3970 GFF3971 - DNA topoisomerase III (EC 5.99.1.2), at 888,083 to 888,532 GFF3971 GFF3972 - Protein of unknown function DUF81, at 888,755 to 889,603 GFF3972 Position (kb) 886 887 888Strain fitness (log2 ratio) -2 -1 0 1 2at 885.261 kb on + strand, within GFF3969at 885.261 kb on + strand, within GFF3969at 885.262 kb on - strand, within GFF3969at 885.262 kb on - strand, within GFF3969at 885.383 kb on + strand, within GFF3969at 885.385 kb on + strand, within GFF3969at 885.385 kb on + strand, within GFF3969at 885.385 kb on + strand, within GFF3969at 885.386 kb on - strand, within GFF3969at 885.386 kb on - strand, within GFF3969at 885.386 kb on - strand, within GFF3969at 885.676 kb on - strand, within GFF3969at 885.676 kb on - strand, within GFF3969at 886.105 kb on - strandat 886.105 kb on - strandat 886.105 kb on - strandat 886.189 kb on + strandat 886.189 kb on + strandat 886.189 kb on + strandat 886.189 kb on + strandat 886.189 kb on + strandat 886.189 kb on + strandat 886.189 kb on + strandat 886.190 kb on - strandat 886.190 kb on - strandat 886.190 kb on - strandat 886.190 kb on - strandat 886.190 kb on - strandat 886.190 kb on - strandat 886.402 kb on + strand, within GFF3970at 886.403 kb on - strand, within GFF3970at 886.406 kb on - strand, within GFF3970at 886.406 kb on - strand, within GFF3970at 886.406 kb on - strand, within GFF3970at 886.501 kb on + strand, within GFF3970at 886.501 kb on + strand, within GFF3970at 886.502 kb on - strand, within GFF3970at 886.502 kb on - strand, within GFF3970at 887.068 kb on + strand, within GFF3970at 887.068 kb on + strand, within GFF3970at 887.068 kb on + strand, within GFF3970at 887.069 kb on - strand, within GFF3970at 887.069 kb on - strand, within GFF3970at 887.069 kb on - strand, within GFF3970at 887.069 kb on - strand, within GFF3970at 887.077 kb on + strand, within GFF3970at 887.077 kb on + strand, within GFF3970at 887.077 kb on + strand, within GFF3970at 887.077 kb on + strand, within GFF3970at 887.077 kb on + strand, within GFF3970at 887.077 kb on + strand, within GFF3970at 887.077 kb on + strand, within GFF3970at 887.078 kb on - strand, within GFF3970at 887.078 kb on - strand, within GFF3970at 887.078 kb on - strand, within GFF3970at 887.078 kb on - strand, within GFF3970at 887.078 kb on - strand, within GFF3970at 887.078 kb on - strand, within GFF3970at 887.078 kb on - strand, within GFF3970at 887.078 kb on - strand, within GFF3970at 887.099 kb on + strand, within GFF3970at 887.404 kb on + strand, within GFF3970at 887.536 kb on + strand, within GFF3970at 887.536 kb on + strand, within GFF3970at 887.537 kb on - strand, within GFF3970at 887.557 kb on + strand, within GFF3970at 887.557 kb on + strand, within GFF3970at 887.557 kb on + strand, within GFF3970at 887.558 kb on - strand, within GFF3970at 887.558 kb on - strand, within GFF3970at 887.635 kb on + strand, within GFF3970at 887.636 kb on - strand, within GFF3970at 887.636 kb on - strand, within GFF3970at 887.687 kb on - strand, within GFF3970at 888.084 kb on + strandat 888.085 kb on - strandat 888.085 kb on - strandat 888.219 kb on + strand, within GFF3971at 888.219 kb on + strand, within GFF3971at 888.219 kb on + strand, within GFF3971at 888.220 kb on - strand, within GFF3971at 888.220 kb on - strand, within GFF3971at 888.220 kb on - strand, within GFF3971at 888.505 kb on + strandat 888.549 kb on - strandat 888.549 kb on - strandat 888.549 kb on - strandat 888.605 kb on - strandat 888.774 kb on + strandat 888.774 kb on + strandat 888.774 kb on + strandat 888.775 kb on - strandat 888.775 kb on - strandat 888.775 kb on - strandat 888.775 kb on - strandat 888.783 kb on + strandat 888.783 kb on + strandat 888.783 kb on + strandat 888.783 kb on + strandat 888.783 kb on + strandat 888.784 kb on - strandat 888.784 kb on - strandat 888.784 kb on - strandat 888.784 kb on - strandat 888.784 kb on - strandat 888.784 kb on - strandat 888.798 kb on + strandat 888.798 kb on + strandat 888.798 kb on + strandat 888.798 kb on + strandat 888.798 kb on + strandat 888.798 kb on + strandat 888.798 kb on + strandat 888.798 kb on + strandat 888.798 kb on + strandat 888.798 kb on + strandat 888.798 kb on + strandat 888.799 kb on - strandat 888.799 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
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885,261 + GFF3969 0.25 -0.4
885,261 + GFF3969 0.25 +0.6
885,262 - GFF3969 0.26 +0.4
885,262 - GFF3969 0.26 +0.1
885,383 + GFF3969 0.37 -2.0
885,385 + GFF3969 0.37 +0.0
885,385 + GFF3969 0.37 +0.9
885,385 + GFF3969 0.37 +0.7
885,386 - GFF3969 0.37 +1.3
885,386 - GFF3969 0.37 +0.8
885,386 - GFF3969 0.37 +0.5
885,676 - GFF3969 0.65 +0.3
885,676 - GFF3969 0.65 -0.3
886,105 - +0.7
886,105 - -0.2
886,105 - +0.0
886,189 + -0.2
886,189 + +0.3
886,189 + +0.2
886,189 + -0.1
886,189 + -0.1
886,189 + +0.6
886,189 + -0.1
886,190 - -0.4
886,190 - -1.1
886,190 - -0.3
886,190 - +0.3
886,190 - -1.0
886,190 - -0.7
886,402 + GFF3970 0.16 -2.7
886,403 - GFF3970 0.17 -0.0
886,406 - GFF3970 0.17 -0.4
886,406 - GFF3970 0.17 +0.2
886,406 - GFF3970 0.17 +0.0
886,501 + GFF3970 0.22 +0.3
886,501 + GFF3970 0.22 +0.8
886,502 - GFF3970 0.22 +0.1
886,502 - GFF3970 0.22 -1.0
887,068 + GFF3970 0.54 -0.5
887,068 + GFF3970 0.54 -0.4
887,068 + GFF3970 0.54 -0.1
887,069 - GFF3970 0.54 +0.2
887,069 - GFF3970 0.54 +0.9
887,069 - GFF3970 0.54 -0.3
887,069 - GFF3970 0.54 -1.0
887,077 + GFF3970 0.55 +0.6
887,077 + GFF3970 0.55 +0.1
887,077 + GFF3970 0.55 -0.6
887,077 + GFF3970 0.55 +0.3
887,077 + GFF3970 0.55 +0.1
887,077 + GFF3970 0.55 +0.1
887,077 + GFF3970 0.55 -1.8
887,078 - GFF3970 0.55 -1.2
887,078 - GFF3970 0.55 +0.1
887,078 - GFF3970 0.55 +0.7
887,078 - GFF3970 0.55 +0.5
887,078 - GFF3970 0.55 +0.0
887,078 - GFF3970 0.55 -0.5
887,078 - GFF3970 0.55 +0.2
887,078 - GFF3970 0.55 -0.6
887,099 + GFF3970 0.56 +0.0
887,404 + GFF3970 0.73 -2.6
887,536 + GFF3970 0.81 -0.2
887,536 + GFF3970 0.81 +0.5
887,537 - GFF3970 0.81 -0.0
887,557 + GFF3970 0.82 +0.2
887,557 + GFF3970 0.82 +0.1
887,557 + GFF3970 0.82 -0.6
887,558 - GFF3970 0.82 +0.7
887,558 - GFF3970 0.82 -0.4
887,635 + GFF3970 0.86 +0.1
887,636 - GFF3970 0.86 +0.2
887,636 - GFF3970 0.86 +0.3
887,687 - GFF3970 0.89 +1.7
888,084 + -1.4
888,085 - +0.0
888,085 - +1.4
888,219 + GFF3971 0.30 -0.3
888,219 + GFF3971 0.30 -0.1
888,219 + GFF3971 0.30 +0.2
888,220 - GFF3971 0.30 +0.3
888,220 - GFF3971 0.30 +0.2
888,220 - GFF3971 0.30 +0.4
888,505 + +0.1
888,549 - +0.3
888,549 - +0.6
888,549 - +0.7
888,605 - +1.1
888,774 + -0.6
888,774 + +1.0
888,774 + -0.1
888,775 - +0.3
888,775 - -0.6
888,775 - +0.6
888,775 - -0.2
888,783 + +0.1
888,783 + +0.2
888,783 + +0.7
888,783 + +0.9
888,783 + +0.3
888,784 - -0.1
888,784 - +0.2
888,784 - +0.0
888,784 - -0.2
888,784 - +0.6
888,784 - -0.3
888,798 + -0.4
888,798 + +0.4
888,798 + +0.9
888,798 + +0.0
888,798 + +2.2
888,798 + +0.4
888,798 + +1.3
888,798 + -1.0
888,798 + +1.0
888,798 + +0.4
888,798 + +0.2
888,799 - +0.5
888,799 - -0.3

Or see this region's nucleotide sequence