Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3940 and GFF3941 are separated by 1 nucleotides GFF3941 and GFF3942 are separated by 46 nucleotides GFF3942 and GFF3943 are separated by 67 nucleotides
GFF3940 - Molybdenum cofactor biosynthesis protein MoaE, at 852,942 to 853,415
GFF3940
GFF3941 - GCN5-related N-acetyltransferase, at 853,417 to 854,172
GFF3941
GFF3942 - ClpB protein, at 854,219 to 856,837
GFF3942
GFF3943 - Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68), at 856,905 to 858,335
GFF3943
Position (kb) 854
855
856
857 Strain fitness (log2 ratio) -2
-1
0
1
2 at 853.290 kb on + strand, within GFF3940 at 853.290 kb on + strand, within GFF3940 at 853.290 kb on + strand, within GFF3940 at 853.886 kb on - strand, within GFF3941 at 854.300 kb on + strand at 854.301 kb on - strand at 854.702 kb on + strand, within GFF3942 at 855.176 kb on + strand, within GFF3942 at 855.176 kb on + strand, within GFF3942 at 855.176 kb on + strand, within GFF3942 at 855.176 kb on + strand, within GFF3942 at 855.176 kb on + strand, within GFF3942 at 855.177 kb on - strand, within GFF3942 at 855.177 kb on - strand, within GFF3942 at 855.281 kb on + strand, within GFF3942 at 855.281 kb on + strand, within GFF3942 at 855.282 kb on - strand, within GFF3942 at 855.351 kb on - strand, within GFF3942 at 855.351 kb on - strand, within GFF3942 at 855.573 kb on - strand, within GFF3942 at 855.584 kb on + strand, within GFF3942 at 855.585 kb on - strand, within GFF3942 at 855.719 kb on + strand, within GFF3942 at 855.719 kb on + strand, within GFF3942 at 856.220 kb on + strand, within GFF3942 at 856.220 kb on + strand, within GFF3942 at 856.221 kb on - strand, within GFF3942 at 856.221 kb on - strand, within GFF3942 at 856.221 kb on - strand, within GFF3942 at 856.250 kb on + strand, within GFF3942 at 856.436 kb on + strand, within GFF3942 at 856.730 kb on + strand at 856.731 kb on - strand at 856.748 kb on + strand at 856.901 kb on + strand at 856.902 kb on - strand at 856.902 kb on - strand at 856.965 kb on + strand at 856.965 kb on + strand at 856.966 kb on - strand at 856.966 kb on - strand at 856.966 kb on - strand at 856.966 kb on - strand at 856.966 kb on - strand at 857.208 kb on + strand, within GFF3943 at 857.209 kb on - strand, within GFF3943 at 857.209 kb on - strand, within GFF3943 at 857.209 kb on - strand, within GFF3943 at 857.280 kb on + strand, within GFF3943 at 857.280 kb on + strand, within GFF3943 at 857.679 kb on + strand, within GFF3943 at 857.679 kb on + strand, within GFF3943 at 857.679 kb on + strand, within GFF3943 at 857.679 kb on + strand, within GFF3943 at 857.725 kb on - strand, within GFF3943 at 857.725 kb on - strand, within GFF3943
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 853,290 + GFF3940 0.73 -1.1 853,290 + GFF3940 0.73 +0.3 853,290 + GFF3940 0.73 -0.7 853,886 - GFF3941 0.62 -0.2 854,300 + -1.0 854,301 - -0.2 854,702 + GFF3942 0.18 -0.3 855,176 + GFF3942 0.37 +0.0 855,176 + GFF3942 0.37 -0.9 855,176 + GFF3942 0.37 -1.1 855,176 + GFF3942 0.37 -0.2 855,176 + GFF3942 0.37 -1.4 855,177 - GFF3942 0.37 -0.1 855,177 - GFF3942 0.37 -0.4 855,281 + GFF3942 0.41 -0.9 855,281 + GFF3942 0.41 -0.7 855,282 - GFF3942 0.41 -0.5 855,351 - GFF3942 0.43 -0.6 855,351 - GFF3942 0.43 -0.3 855,573 - GFF3942 0.52 +2.2 855,584 + GFF3942 0.52 +0.1 855,585 - GFF3942 0.52 -0.8 855,719 + GFF3942 0.57 -0.6 855,719 + GFF3942 0.57 -0.4 856,220 + GFF3942 0.76 -1.8 856,220 + GFF3942 0.76 +0.1 856,221 - GFF3942 0.76 +0.0 856,221 - GFF3942 0.76 +0.7 856,221 - GFF3942 0.76 +0.7 856,250 + GFF3942 0.78 -0.7 856,436 + GFF3942 0.85 -0.1 856,730 + +0.5 856,731 - -0.5 856,748 + -0.6 856,901 + +0.0 856,902 - +1.1 856,902 - +0.1 856,965 + -1.6 856,965 + -0.5 856,966 - +0.5 856,966 - +1.0 856,966 - -0.3 856,966 - -0.3 856,966 - +1.6 857,208 + GFF3943 0.21 -0.2 857,209 - GFF3943 0.21 -0.5 857,209 - GFF3943 0.21 -0.3 857,209 - GFF3943 0.21 -0.3 857,280 + GFF3943 0.26 -0.0 857,280 + GFF3943 0.26 +0.6 857,679 + GFF3943 0.54 -0.2 857,679 + GFF3943 0.54 -0.3 857,679 + GFF3943 0.54 +0.3 857,679 + GFF3943 0.54 -0.2 857,725 - GFF3943 0.57 -0.3 857,725 - GFF3943 0.57 +0.1
Or see this region's nucleotide sequence