Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3938 and GFF3939 overlap by 4 nucleotides GFF3939 and GFF3940 are separated by 1 nucleotides GFF3940 and GFF3941 are separated by 1 nucleotides GFF3941 and GFF3942 are separated by 46 nucleotides
GFF3938 - Molybdopterin biosynthesis protein MoeA, at 851,436 to 852,692
GFF3938
GFF3939 - Molybdenum cofactor biosynthesis protein MoaD, at 852,689 to 852,940
GFF3939
GFF3940 - Molybdenum cofactor biosynthesis protein MoaE, at 852,942 to 853,415
GFF3940
GFF3941 - GCN5-related N-acetyltransferase, at 853,417 to 854,172
GFF3941
GFF3942 - ClpB protein, at 854,219 to 856,837
GFF3942
Position (kb) 852
853
854 Strain fitness (log2 ratio) -2
-1
0
1
2 at 852.039 kb on + strand, within GFF3938 at 852.039 kb on + strand, within GFF3938 at 852.040 kb on - strand, within GFF3938 at 852.040 kb on - strand, within GFF3938 at 852.291 kb on + strand, within GFF3938 at 852.291 kb on + strand, within GFF3938 at 852.292 kb on - strand, within GFF3938 at 852.663 kb on + strand at 852.663 kb on + strand at 852.664 kb on - strand at 852.664 kb on - strand at 852.664 kb on - strand at 852.664 kb on - strand at 852.815 kb on + strand, within GFF3939 at 852.816 kb on - strand, within GFF3939 at 853.290 kb on + strand, within GFF3940 at 853.290 kb on + strand, within GFF3940 at 853.290 kb on + strand, within GFF3940 at 853.886 kb on - strand, within GFF3941 at 854.300 kb on + strand at 854.301 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 852,039 + GFF3938 0.48 +0.2 852,039 + GFF3938 0.48 -1.4 852,040 - GFF3938 0.48 -1.0 852,040 - GFF3938 0.48 -0.8 852,291 + GFF3938 0.68 +1.0 852,291 + GFF3938 0.68 -1.9 852,292 - GFF3938 0.68 -1.2 852,663 + -0.6 852,663 + -0.7 852,664 - +1.0 852,664 - -0.8 852,664 - +2.0 852,664 - -0.2 852,815 + GFF3939 0.50 +0.3 852,816 - GFF3939 0.50 -1.7 853,290 + GFF3940 0.73 -1.1 853,290 + GFF3940 0.73 +0.3 853,290 + GFF3940 0.73 -0.7 853,886 - GFF3941 0.62 -0.2 854,300 + -1.0 854,301 - -0.2
Or see this region's nucleotide sequence