Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3899 and GFF3900 overlap by 36 nucleotides GFF3900 and GFF3901 overlap by 16 nucleotides GFF3901 and GFF3902 overlap by 4 nucleotides
GFF3899 - Sensory histidine kinase BaeS, at 809,550 to 811,076
GFF3899
GFF3900 - hypothetical protein, at 811,041 to 811,238
GFF3900
GFF3901 - Macrolide-specific efflux protein MacA, at 811,223 to 813,148
GFF3901
GFF3902 - Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-), at 813,145 to 815,148
GFF3902
Position (kb) 811
812
813
814 Strain fitness (log2 ratio) -1
0
1 at 810.325 kb on + strand, within GFF3899 at 810.326 kb on - strand, within GFF3899 at 810.326 kb on - strand, within GFF3899 at 810.514 kb on + strand, within GFF3899 at 810.514 kb on + strand, within GFF3899 at 810.514 kb on + strand, within GFF3899 at 810.515 kb on - strand, within GFF3899 at 810.515 kb on - strand, within GFF3899 at 810.523 kb on + strand, within GFF3899 at 810.523 kb on + strand, within GFF3899 at 810.910 kb on + strand, within GFF3899 at 810.943 kb on + strand at 810.952 kb on + strand at 811.092 kb on - strand, within GFF3900 at 811.152 kb on - strand, within GFF3900 at 811.165 kb on + strand, within GFF3900 at 811.253 kb on + strand at 811.352 kb on + strand at 811.355 kb on + strand at 811.356 kb on - strand at 811.356 kb on - strand at 811.391 kb on + strand at 811.391 kb on + strand at 811.466 kb on + strand, within GFF3901 at 811.467 kb on - strand, within GFF3901 at 811.832 kb on + strand, within GFF3901 at 811.832 kb on + strand, within GFF3901 at 811.833 kb on - strand, within GFF3901 at 811.833 kb on - strand, within GFF3901 at 811.844 kb on + strand, within GFF3901 at 812.015 kb on + strand, within GFF3901 at 812.015 kb on + strand, within GFF3901 at 812.108 kb on + strand, within GFF3901 at 812.108 kb on + strand, within GFF3901 at 812.109 kb on - strand, within GFF3901 at 813.298 kb on + strand at 813.398 kb on - strand, within GFF3902 at 813.487 kb on + strand, within GFF3902 at 813.487 kb on + strand, within GFF3902 at 813.488 kb on - strand, within GFF3902 at 813.488 kb on - strand, within GFF3902 at 813.488 kb on - strand, within GFF3902 at 813.542 kb on - strand, within GFF3902
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 810,325 + GFF3899 0.51 -0.3 810,326 - GFF3899 0.51 +0.2 810,326 - GFF3899 0.51 -0.1 810,514 + GFF3899 0.63 -0.6 810,514 + GFF3899 0.63 -0.9 810,514 + GFF3899 0.63 -0.5 810,515 - GFF3899 0.63 +0.7 810,515 - GFF3899 0.63 +1.6 810,523 + GFF3899 0.64 -1.0 810,523 + GFF3899 0.64 -0.6 810,910 + GFF3899 0.89 +0.1 810,943 + +0.0 810,952 + -1.0 811,092 - GFF3900 0.26 +0.5 811,152 - GFF3900 0.56 +1.2 811,165 + GFF3900 0.63 +0.4 811,253 + -1.7 811,352 + -1.1 811,355 + +0.8 811,356 - -0.1 811,356 - +1.0 811,391 + -0.6 811,391 + +0.7 811,466 + GFF3901 0.13 +0.7 811,467 - GFF3901 0.13 +0.2 811,832 + GFF3901 0.32 -0.5 811,832 + GFF3901 0.32 +1.0 811,833 - GFF3901 0.32 -0.1 811,833 - GFF3901 0.32 -0.0 811,844 + GFF3901 0.32 +0.2 812,015 + GFF3901 0.41 -0.9 812,015 + GFF3901 0.41 +0.6 812,108 + GFF3901 0.46 -0.3 812,108 + GFF3901 0.46 -0.1 812,109 - GFF3901 0.46 -0.0 813,298 + +0.1 813,398 - GFF3902 0.13 -0.5 813,487 + GFF3902 0.17 -0.0 813,487 + GFF3902 0.17 -0.4 813,488 - GFF3902 0.17 -0.1 813,488 - GFF3902 0.17 +0.5 813,488 - GFF3902 0.17 +0.5 813,542 - GFF3902 0.20 -1.0
Or see this region's nucleotide sequence