Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3837 and GFF3838 overlap by 4 nucleotides GFF3838 and GFF3839 are separated by 246 nucleotides GFF3839 and GFF3840 are separated by 12 nucleotides
GFF3837 - putative inner membrane efflux protein, at 744,871 to 746,049
GFF3837
GFF3838 - Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family, at 746,046 to 746,726
GFF3838
GFF3839 - RND efflux system, membrane fusion protein CmeA, at 746,973 to 748,160
GFF3839
GFF3840 - RND efflux system, inner membrane transporter CmeB, at 748,173 to 751,337
GFF3840
Position (kb) 746
747
748
749 Strain fitness (log2 ratio) -1
0
1
2
3 at 746.047 kb on + strand at 746.581 kb on + strand, within GFF3838 at 746.581 kb on + strand, within GFF3838 at 746.728 kb on + strand at 746.729 kb on + strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.730 kb on - strand at 746.771 kb on - strand at 746.772 kb on + strand at 746.772 kb on + strand at 746.772 kb on + strand at 746.772 kb on + strand at 746.773 kb on - strand at 746.776 kb on + strand at 746.790 kb on + strand at 746.795 kb on - strand at 746.795 kb on - strand at 746.796 kb on + strand at 746.796 kb on + strand at 746.797 kb on - strand at 746.832 kb on + strand at 746.832 kb on + strand at 746.841 kb on + strand at 746.841 kb on + strand at 746.841 kb on + strand at 746.842 kb on - strand at 746.842 kb on - strand at 746.874 kb on - strand at 747.252 kb on + strand, within GFF3839 at 747.252 kb on + strand, within GFF3839 at 747.253 kb on - strand, within GFF3839 at 747.378 kb on + strand, within GFF3839 at 747.378 kb on + strand, within GFF3839 at 747.468 kb on + strand, within GFF3839 at 747.469 kb on - strand, within GFF3839 at 747.588 kb on + strand, within GFF3839 at 747.588 kb on + strand, within GFF3839 at 747.588 kb on + strand, within GFF3839 at 747.589 kb on - strand, within GFF3839 at 747.589 kb on - strand, within GFF3839 at 747.589 kb on - strand, within GFF3839 at 747.828 kb on + strand, within GFF3839 at 747.828 kb on + strand, within GFF3839 at 747.829 kb on - strand, within GFF3839 at 747.829 kb on - strand, within GFF3839 at 748.158 kb on + strand at 748.158 kb on + strand at 748.158 kb on + strand at 748.158 kb on + strand at 748.159 kb on - strand at 748.275 kb on + strand at 748.401 kb on + strand at 748.401 kb on + strand at 748.401 kb on + strand at 748.401 kb on + strand at 748.401 kb on + strand at 748.401 kb on + strand at 748.401 kb on + strand at 748.402 kb on - strand at 748.402 kb on - strand at 748.402 kb on - strand at 748.402 kb on - strand at 748.402 kb on - strand at 748.402 kb on - strand at 748.402 kb on - strand at 748.642 kb on - strand, within GFF3840 at 748.995 kb on + strand, within GFF3840 at 748.995 kb on + strand, within GFF3840 at 748.995 kb on + strand, within GFF3840 at 748.996 kb on - strand, within GFF3840 at 748.996 kb on - strand, within GFF3840 at 748.996 kb on - strand, within GFF3840 at 748.996 kb on - strand, within GFF3840 at 748.996 kb on - strand, within GFF3840 at 749.151 kb on + strand, within GFF3840
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 746,047 + +0.2 746,581 + GFF3838 0.79 -0.0 746,581 + GFF3838 0.79 -0.6 746,728 + -1.3 746,729 + -0.6 746,730 - +1.1 746,730 - -0.3 746,730 - -0.7 746,730 - -0.1 746,730 - +0.2 746,730 - +1.0 746,730 - +0.3 746,730 - -1.3 746,730 - -0.9 746,730 - -0.0 746,730 - -0.4 746,730 - -1.1 746,730 - -0.2 746,730 - -1.1 746,730 - -0.2 746,730 - -0.0 746,730 - -0.4 746,771 - +0.4 746,772 + +0.6 746,772 + -0.2 746,772 + -0.0 746,772 + -0.1 746,773 - +0.1 746,776 + +0.0 746,790 + +0.3 746,795 - -0.0 746,795 - -0.2 746,796 + -1.0 746,796 + -0.3 746,797 - -0.8 746,832 + -0.1 746,832 + +1.0 746,841 + +0.1 746,841 + +2.8 746,841 + +0.8 746,842 - +0.5 746,842 - +0.2 746,874 - +1.0 747,252 + GFF3839 0.23 +0.1 747,252 + GFF3839 0.23 -0.6 747,253 - GFF3839 0.24 -1.3 747,378 + GFF3839 0.34 +0.6 747,378 + GFF3839 0.34 -0.4 747,468 + GFF3839 0.42 +0.1 747,469 - GFF3839 0.42 +0.4 747,588 + GFF3839 0.52 -0.1 747,588 + GFF3839 0.52 -0.1 747,588 + GFF3839 0.52 +0.1 747,589 - GFF3839 0.52 -0.2 747,589 - GFF3839 0.52 -0.4 747,589 - GFF3839 0.52 -1.3 747,828 + GFF3839 0.72 -0.1 747,828 + GFF3839 0.72 -0.5 747,829 - GFF3839 0.72 +1.0 747,829 - GFF3839 0.72 -0.8 748,158 + +0.5 748,158 + -0.7 748,158 + +0.2 748,158 + +0.2 748,159 - -0.1 748,275 + -0.6 748,401 + +1.3 748,401 + -0.2 748,401 + -0.0 748,401 + -0.3 748,401 + -0.1 748,401 + -1.0 748,401 + -0.6 748,402 - -0.7 748,402 - -0.3 748,402 - -0.0 748,402 - -0.7 748,402 - -0.5 748,402 - -0.8 748,402 - -0.6 748,642 - GFF3840 0.15 +0.5 748,995 + GFF3840 0.26 +0.7 748,995 + GFF3840 0.26 -0.3 748,995 + GFF3840 0.26 +0.6 748,996 - GFF3840 0.26 +0.6 748,996 - GFF3840 0.26 -0.5 748,996 - GFF3840 0.26 +0.7 748,996 - GFF3840 0.26 +0.3 748,996 - GFF3840 0.26 -0.7 749,151 + GFF3840 0.31 +0.8
Or see this region's nucleotide sequence