Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF365 and GFF366 overlap by 4 nucleotides GFF366 and GFF367 overlap by 14 nucleotides GFF367 and GFF368 are separated by 211 nucleotides GFF368 and GFF369 overlap by 4 nucleotides
GFF365 - RNA polymerase sigma factor, at 27,135 to 27,701
GFF365
GFF366 - Probable transmembrane protein, at 27,698 to 28,399
GFF366
GFF367 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 28,386 to 30,659
GFF367
GFF368 - miscellaneous; hypothetical/global homology, at 30,871 to 31,362
GFF368
GFF369 - Trypsin domain protein, at 31,359 to 32,627
GFF369
Position (kb) 28
29
30
31 Strain fitness (log2 ratio) -2
-1
0
1 at 27.582 kb on + strand, within GFF365 at 27.582 kb on + strand, within GFF365 at 27.583 kb on - strand, within GFF365 at 27.583 kb on - strand, within GFF365 at 27.737 kb on + strand at 27.738 kb on - strand at 27.738 kb on - strand at 28.067 kb on + strand, within GFF366 at 28.067 kb on + strand, within GFF366 at 28.068 kb on - strand, within GFF366 at 28.370 kb on + strand at 28.615 kb on + strand, within GFF367 at 28.615 kb on + strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.637 kb on - strand, within GFF367 at 29.075 kb on - strand, within GFF367 at 29.251 kb on + strand, within GFF367 at 29.252 kb on - strand, within GFF367 at 29.542 kb on + strand, within GFF367 at 29.542 kb on + strand, within GFF367 at 29.543 kb on - strand, within GFF367 at 29.554 kb on + strand, within GFF367 at 29.555 kb on - strand, within GFF367 at 30.355 kb on + strand, within GFF367 at 30.355 kb on + strand, within GFF367 at 30.355 kb on + strand, within GFF367 at 30.356 kb on - strand, within GFF367 at 30.356 kb on - strand, within GFF367 at 30.356 kb on - strand, within GFF367 at 30.690 kb on - strand at 30.690 kb on - strand at 30.734 kb on + strand at 30.734 kb on + strand at 30.735 kb on - strand at 30.735 kb on - strand at 30.735 kb on - strand at 30.744 kb on + strand at 30.922 kb on + strand, within GFF368 at 31.108 kb on + strand, within GFF368 at 31.108 kb on + strand, within GFF368 at 31.603 kb on - strand, within GFF369 at 31.603 kb on - strand, within GFF369
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 27,582 + GFF365 0.79 +0.1 27,582 + GFF365 0.79 -1.3 27,583 - GFF365 0.79 -0.1 27,583 - GFF365 0.79 +0.3 27,737 + -0.6 27,738 - +1.4 27,738 - -2.4 28,067 + GFF366 0.53 -1.0 28,067 + GFF366 0.53 +0.7 28,068 - GFF366 0.53 +1.0 28,370 + -1.0 28,615 + GFF367 0.10 -0.1 28,615 + GFF367 0.10 -0.1 28,616 - GFF367 0.10 -0.2 28,616 - GFF367 0.10 -2.0 28,616 - GFF367 0.10 -0.4 28,616 - GFF367 0.10 +0.7 28,616 - GFF367 0.10 +1.3 28,637 - GFF367 0.11 +0.5 29,075 - GFF367 0.30 -0.6 29,251 + GFF367 0.38 +0.8 29,252 - GFF367 0.38 -1.3 29,542 + GFF367 0.51 +0.8 29,542 + GFF367 0.51 +0.0 29,543 - GFF367 0.51 -0.1 29,554 + GFF367 0.51 +0.2 29,555 - GFF367 0.51 -0.7 30,355 + GFF367 0.87 -1.5 30,355 + GFF367 0.87 -0.8 30,355 + GFF367 0.87 -1.3 30,356 - GFF367 0.87 -0.8 30,356 - GFF367 0.87 +0.0 30,356 - GFF367 0.87 -1.0 30,690 - -0.1 30,690 - +0.4 30,734 + +0.2 30,734 + +1.0 30,735 - +0.6 30,735 - +0.0 30,735 - -0.3 30,744 + +0.6 30,922 + GFF368 0.10 -0.4 31,108 + GFF368 0.48 +0.1 31,108 + GFF368 0.48 +1.4 31,603 - GFF369 0.19 -0.3 31,603 - GFF369 0.19 -0.4
Or see this region's nucleotide sequence