Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3413 and GFF3414 are separated by 9 nucleotides GFF3414 and GFF3415 are separated by 2 nucleotides
GFF3413 - Rieske (2Fe-2S) protein, at 298,449 to 299,558
GFF3413
GFF3414 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11), at 299,568 to 300,431
GFF3414
GFF3415 - Kynureninase (EC 3.7.1.3), at 300,434 to 301,720
GFF3415
Position (kb) 299
300
301 Strain fitness (log2 ratio) -1
0
1 at 298.632 kb on + strand, within GFF3413 at 298.968 kb on + strand, within GFF3413 at 298.969 kb on - strand, within GFF3413 at 299.217 kb on + strand, within GFF3413 at 299.265 kb on + strand, within GFF3413 at 299.266 kb on - strand, within GFF3413 at 299.266 kb on - strand, within GFF3413 at 299.319 kb on + strand, within GFF3413 at 299.633 kb on - strand at 299.633 kb on - strand at 299.758 kb on + strand, within GFF3414 at 299.759 kb on - strand, within GFF3414 at 299.788 kb on + strand, within GFF3414 at 299.789 kb on - strand, within GFF3414 at 299.831 kb on - strand, within GFF3414 at 299.929 kb on + strand, within GFF3414 at 300.025 kb on + strand, within GFF3414 at 300.080 kb on - strand, within GFF3414 at 300.080 kb on - strand, within GFF3414 at 300.161 kb on - strand, within GFF3414 at 300.331 kb on + strand, within GFF3414 at 300.341 kb on - strand, within GFF3414 at 300.541 kb on - strand at 300.541 kb on - strand at 300.645 kb on + strand, within GFF3415 at 300.645 kb on + strand, within GFF3415 at 301.035 kb on + strand, within GFF3415 at 301.035 kb on + strand, within GFF3415 at 301.035 kb on + strand, within GFF3415 at 301.036 kb on - strand, within GFF3415 at 301.036 kb on - strand, within GFF3415 at 301.036 kb on - strand, within GFF3415 at 301.041 kb on + strand, within GFF3415 at 301.042 kb on - strand, within GFF3415 at 301.059 kb on + strand, within GFF3415 at 301.060 kb on - strand, within GFF3415 at 301.191 kb on + strand, within GFF3415 at 301.192 kb on - strand, within GFF3415 at 301.308 kb on + strand, within GFF3415 at 301.308 kb on + strand, within GFF3415 at 301.308 kb on + strand, within GFF3415 at 301.308 kb on + strand, within GFF3415 at 301.309 kb on - strand, within GFF3415 at 301.309 kb on - strand, within GFF3415 at 301.309 kb on - strand, within GFF3415
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 298,632 + GFF3413 0.16 +0.4 298,968 + GFF3413 0.47 +0.4 298,969 - GFF3413 0.47 -0.5 299,217 + GFF3413 0.69 +1.0 299,265 + GFF3413 0.74 +0.1 299,266 - GFF3413 0.74 +0.1 299,266 - GFF3413 0.74 -0.8 299,319 + GFF3413 0.78 +0.3 299,633 - +0.6 299,633 - +0.4 299,758 + GFF3414 0.22 -0.6 299,759 - GFF3414 0.22 -0.1 299,788 + GFF3414 0.25 -0.3 299,789 - GFF3414 0.26 +0.5 299,831 - GFF3414 0.30 +0.8 299,929 + GFF3414 0.42 -1.6 300,025 + GFF3414 0.53 -0.6 300,080 - GFF3414 0.59 +0.2 300,080 - GFF3414 0.59 +0.4 300,161 - GFF3414 0.69 +0.7 300,331 + GFF3414 0.88 -0.8 300,341 - GFF3414 0.89 -0.4 300,541 - -0.9 300,541 - -0.5 300,645 + GFF3415 0.16 +0.5 300,645 + GFF3415 0.16 -0.5 301,035 + GFF3415 0.47 +0.1 301,035 + GFF3415 0.47 -0.6 301,035 + GFF3415 0.47 +1.2 301,036 - GFF3415 0.47 -0.0 301,036 - GFF3415 0.47 +1.5 301,036 - GFF3415 0.47 +0.8 301,041 + GFF3415 0.47 +0.4 301,042 - GFF3415 0.47 -0.0 301,059 + GFF3415 0.49 -0.3 301,060 - GFF3415 0.49 +0.1 301,191 + GFF3415 0.59 -0.6 301,192 - GFF3415 0.59 -1.3 301,308 + GFF3415 0.68 -1.0 301,308 + GFF3415 0.68 -0.1 301,308 + GFF3415 0.68 -1.2 301,308 + GFF3415 0.68 +0.6 301,309 - GFF3415 0.68 +0.5 301,309 - GFF3415 0.68 -0.6 301,309 - GFF3415 0.68 +0.3
Or see this region's nucleotide sequence