Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3352

Experiment: Ying_sugar7 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 3
235,640	-		GFF3351	0.38	-1.2
235,858	+		GFF3351	0.58	-0.3
235,859	-		GFF3351	0.58	-0.0
235,859	-		GFF3351	0.58	+0.2
235,909	+		GFF3351	0.63	+0.6
235,909	+		GFF3351	0.63	+1.0
235,909	+		GFF3351	0.63	+0.1
235,909	+		GFF3351	0.63	-2.0
235,910	-		GFF3351	0.63	-0.0
235,910	-		GFF3351	0.63	-0.0
236,284	+				+0.6
236,284	+				-1.0
236,284	+				+0.6
236,285	-				-0.4
236,285	-				-1.3
236,285	-				+0.4
236,285	-				-0.3
236,475	+		GFF3352	0.23	-0.5
236,887	-		GFF3352	0.83	+0.3
236,887	-		GFF3352	0.83	+1.0
236,887	-		GFF3352	0.83	-0.4
236,887	-		GFF3352	0.83	-1.4
236,929	-		GFF3352	0.89	+0.1