Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3316

Experiment: Ying_sugar7 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3314 and GFF3315 are separated by 57 nucleotidesGFF3315 and GFF3316 are separated by 343 nucleotidesGFF3316 and GFF3317 are separated by 139 nucleotides GFF3314 - Transcriptional regulator, at 200,812 to 201,705 GFF3314 GFF3315 - FIG00932412: hypothetical protein, at 201,763 to 202,158 GFF3315 GFF3316 - XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase), at 202,502 to 203,353 GFF3316 GFF3317 - conserved hypothetical membrane protein, paralogue of Y20848, at 203,493 to 204,689 GFF3317 Position (kb) 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 201.764 kb on + strandat 201.764 kb on + strandat 201.764 kb on + strandat 201.764 kb on + strandat 201.764 kb on + strandat 201.839 kb on + strand, within GFF3315at 201.839 kb on + strand, within GFF3315at 201.840 kb on - strand, within GFF3315at 201.840 kb on - strand, within GFF3315at 202.031 kb on + strand, within GFF3315at 202.031 kb on + strand, within GFF3315at 202.032 kb on - strand, within GFF3315at 202.032 kb on - strand, within GFF3315at 202.055 kb on + strand, within GFF3315at 202.055 kb on + strand, within GFF3315at 202.055 kb on + strand, within GFF3315at 202.055 kb on + strand, within GFF3315at 202.056 kb on - strand, within GFF3315at 202.056 kb on - strand, within GFF3315at 202.056 kb on - strand, within GFF3315at 202.056 kb on - strand, within GFF3315at 202.083 kb on - strand, within GFF3315at 202.316 kb on - strandat 202.380 kb on + strandat 202.380 kb on + strandat 202.380 kb on + strandat 202.381 kb on - strandat 202.381 kb on - strandat 202.381 kb on - strandat 202.401 kb on + strandat 202.401 kb on + strandat 202.401 kb on + strandat 202.401 kb on + strandat 202.401 kb on + strandat 202.401 kb on + strandat 202.402 kb on - strandat 202.402 kb on - strandat 202.427 kb on + strandat 202.427 kb on + strandat 202.428 kb on - strandat 202.464 kb on + strandat 202.464 kb on + strandat 202.468 kb on + strandat 202.469 kb on - strandat 202.469 kb on - strandat 202.469 kb on - strandat 202.474 kb on + strandat 202.474 kb on + strandat 202.474 kb on + strandat 202.474 kb on + strandat 202.474 kb on + strandat 202.474 kb on + strandat 202.475 kb on - strandat 202.475 kb on - strandat 202.475 kb on - strandat 202.475 kb on - strandat 202.527 kb on + strandat 202.528 kb on - strandat 203.004 kb on - strand, within GFF3316at 203.004 kb on - strand, within GFF3316at 203.004 kb on - strand, within GFF3316at 203.502 kb on + strandat 203.502 kb on + strandat 203.503 kb on - strandat 203.503 kb on - strandat 203.503 kb on - strandat 203.576 kb on + strandat 203.682 kb on + strand, within GFF3317at 203.683 kb on - strand, within GFF3317at 203.683 kb on - strand, within GFF3317at 203.742 kb on + strand, within GFF3317at 203.754 kb on + strand, within GFF3317at 203.754 kb on + strand, within GFF3317at 203.754 kb on + strand, within GFF3317at 203.754 kb on + strand, within GFF3317at 203.754 kb on + strand, within GFF3317at 203.755 kb on - strand, within GFF3317at 203.755 kb on - strand, within GFF3317at 203.755 kb on - strand, within GFF3317at 203.796 kb on + strand, within GFF3317at 203.817 kb on + strand, within GFF3317at 204.189 kb on + strand, within GFF3317at 204.189 kb on + strand, within GFF3317at 204.190 kb on - strand, within GFF3317at 204.190 kb on - strand, within GFF3317at 204.190 kb on - strand, within GFF3317at 204.232 kb on - strand, within GFF3317at 204.243 kb on + strand, within GFF3317at 204.255 kb on + strand, within GFF3317at 204.255 kb on + strand, within GFF3317at 204.256 kb on - strand, within GFF3317

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
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201,764 + -0.3
201,764 + +0.6
201,764 + -0.9
201,764 + -0.2
201,764 + +0.3
201,839 + GFF3315 0.19 +1.5
201,839 + GFF3315 0.19 +0.4
201,840 - GFF3315 0.19 +0.7
201,840 - GFF3315 0.19 +0.2
202,031 + GFF3315 0.68 -0.3
202,031 + GFF3315 0.68 +0.6
202,032 - GFF3315 0.68 +0.7
202,032 - GFF3315 0.68 -1.4
202,055 + GFF3315 0.74 +0.3
202,055 + GFF3315 0.74 +0.1
202,055 + GFF3315 0.74 -0.6
202,055 + GFF3315 0.74 +0.5
202,056 - GFF3315 0.74 -0.2
202,056 - GFF3315 0.74 +0.9
202,056 - GFF3315 0.74 +0.5
202,056 - GFF3315 0.74 +0.5
202,083 - GFF3315 0.81 +0.8
202,316 - -1.0
202,380 + +1.9
202,380 + -0.8
202,380 + +0.7
202,381 - -0.7
202,381 - -0.9
202,381 - +0.9
202,401 + -0.7
202,401 + -1.7
202,401 + +0.2
202,401 + -0.1
202,401 + +0.0
202,401 + -1.4
202,402 - +1.0
202,402 - -0.1
202,427 + +0.1
202,427 + +0.4
202,428 - +0.0
202,464 + -1.3
202,464 + +0.3
202,468 + -0.2
202,469 - -1.8
202,469 - -3.2
202,469 - -0.8
202,474 + -0.5
202,474 + +0.1
202,474 + -0.5
202,474 + -0.3
202,474 + +0.1
202,474 + +0.4
202,475 - +0.5
202,475 - -0.3
202,475 - -0.0
202,475 - +0.0
202,527 + -0.9
202,528 - -0.2
203,004 - GFF3316 0.59 -0.2
203,004 - GFF3316 0.59 -1.2
203,004 - GFF3316 0.59 -0.1
203,502 + -0.2
203,502 + -0.4
203,503 - +0.2
203,503 - +0.5
203,503 - -0.1
203,576 + -0.1
203,682 + GFF3317 0.16 -1.0
203,683 - GFF3317 0.16 +0.5
203,683 - GFF3317 0.16 -0.2
203,742 + GFF3317 0.21 -0.1
203,754 + GFF3317 0.22 -0.1
203,754 + GFF3317 0.22 -1.0
203,754 + GFF3317 0.22 -1.0
203,754 + GFF3317 0.22 -0.5
203,754 + GFF3317 0.22 -0.4
203,755 - GFF3317 0.22 +0.7
203,755 - GFF3317 0.22 -0.2
203,755 - GFF3317 0.22 -0.2
203,796 + GFF3317 0.25 +0.5
203,817 + GFF3317 0.27 -1.4
204,189 + GFF3317 0.58 -0.6
204,189 + GFF3317 0.58 +0.2
204,190 - GFF3317 0.58 -0.4
204,190 - GFF3317 0.58 +0.5
204,190 - GFF3317 0.58 +0.7
204,232 - GFF3317 0.62 +0.3
204,243 + GFF3317 0.63 -0.5
204,255 + GFF3317 0.64 +0.0
204,255 + GFF3317 0.64 +0.1
204,256 - GFF3317 0.64 +0.3

Or see this region's nucleotide sequence