Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3293 and GFF3294 are separated by 123 nucleotides GFF3294 and GFF3295 are separated by 66 nucleotides GFF3295 and GFF3296 are separated by 18 nucleotides GFF3296 and GFF3297 are separated by 30 nucleotides
GFF3293 - probable response regulator, at 178,326 to 180,020
GFF3293
GFF3294 - probable alpha helix chain yaiN, at 180,144 to 180,419
GFF3294
GFF3295 - Cobalt-zinc-cadmium resistance protein CzcD, at 180,486 to 181,433
GFF3295
GFF3296 - Urease accessory protein UreD, at 181,452 to 182,285
GFF3296
GFF3297 - cytidine/deoxycytidylate deaminase family protein, at 182,316 to 182,807
GFF3297
Position (kb) 180
181
182 Strain fitness (log2 ratio) -1
0
1 at 179.512 kb on + strand, within GFF3293 at 179.512 kb on + strand, within GFF3293 at 179.521 kb on + strand, within GFF3293 at 179.521 kb on + strand, within GFF3293 at 179.522 kb on - strand, within GFF3293 at 179.522 kb on - strand, within GFF3293 at 179.722 kb on + strand, within GFF3293 at 179.723 kb on - strand, within GFF3293 at 180.154 kb on + strand at 180.447 kb on + strand at 180.628 kb on - strand, within GFF3295 at 180.706 kb on - strand, within GFF3295 at 180.706 kb on - strand, within GFF3295 at 180.780 kb on + strand, within GFF3295 at 180.781 kb on - strand, within GFF3295 at 180.781 kb on - strand, within GFF3295 at 180.781 kb on - strand, within GFF3295 at 180.781 kb on - strand, within GFF3295 at 180.826 kb on - strand, within GFF3295 at 180.867 kb on + strand, within GFF3295 at 180.867 kb on + strand, within GFF3295 at 180.868 kb on - strand, within GFF3295 at 181.024 kb on - strand, within GFF3295 at 181.306 kb on - strand, within GFF3295 at 182.038 kb on + strand, within GFF3296
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 179,512 + GFF3293 0.70 -0.5 179,512 + GFF3293 0.70 +0.8 179,521 + GFF3293 0.71 -0.5 179,521 + GFF3293 0.71 +0.6 179,522 - GFF3293 0.71 +0.1 179,522 - GFF3293 0.71 -0.2 179,722 + GFF3293 0.82 -0.7 179,723 - GFF3293 0.82 -0.2 180,154 + -1.1 180,447 + -1.4 180,628 - GFF3295 0.15 -0.7 180,706 - GFF3295 0.23 +0.2 180,706 - GFF3295 0.23 +0.1 180,780 + GFF3295 0.31 +0.2 180,781 - GFF3295 0.31 +0.3 180,781 - GFF3295 0.31 -0.8 180,781 - GFF3295 0.31 +0.0 180,781 - GFF3295 0.31 -0.3 180,826 - GFF3295 0.36 +0.4 180,867 + GFF3295 0.40 +0.2 180,867 + GFF3295 0.40 -0.0 180,868 - GFF3295 0.40 -0.1 181,024 - GFF3295 0.57 -0.9 181,306 - GFF3295 0.86 -0.0 182,038 + GFF3296 0.70 +1.2
Or see this region's nucleotide sequence