Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3212 and GFF3213 are separated by 341 nucleotides GFF3213 and GFF3214 are separated by 24 nucleotides GFF3214 and GFF3215 are separated by 443 nucleotides
GFF3212 - hypothetical protein, at 96,758 to 96,886
GFF3212
GFF3213 - hypothetical protein, at 97,228 to 97,653
GFF3213
GFF3214 - histone-like protein, at 97,678 to 98,067
GFF3214
GFF3215 - hypothetical protein, at 98,511 to 99,017
GFF3215
Position (kb) 97
98 Strain fitness (log2 ratio) -1
0
1
2 at 96.263 kb on + strand at 96.263 kb on + strand at 96.263 kb on + strand at 96.264 kb on - strand at 96.264 kb on - strand at 96.272 kb on + strand at 96.272 kb on + strand at 96.273 kb on - strand at 96.834 kb on + strand, within GFF3212 at 96.885 kb on - strand at 97.078 kb on + strand at 97.079 kb on - strand at 97.079 kb on - strand at 97.079 kb on - strand at 97.079 kb on - strand at 97.150 kb on + strand at 97.195 kb on + strand at 97.202 kb on - strand at 97.210 kb on + strand at 97.210 kb on + strand at 97.211 kb on - strand at 97.296 kb on + strand, within GFF3213 at 97.501 kb on + strand, within GFF3213 at 97.502 kb on - strand, within GFF3213 at 97.511 kb on + strand, within GFF3213 at 97.511 kb on + strand, within GFF3213 at 97.511 kb on + strand, within GFF3213 at 97.511 kb on + strand, within GFF3213 at 97.512 kb on - strand, within GFF3213 at 97.512 kb on - strand, within GFF3213 at 98.243 kb on + strand at 98.243 kb on + strand at 98.611 kb on + strand, within GFF3215
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 96,263 + -0.4 96,263 + -0.4 96,263 + -0.4 96,264 - -0.2 96,264 - +0.2 96,272 + +0.2 96,272 + -0.7 96,273 - -0.9 96,834 + GFF3212 0.59 -1.1 96,885 - -0.1 97,078 + +0.6 97,079 - +0.1 97,079 - -0.8 97,079 - +0.0 97,079 - +0.0 97,150 + -0.9 97,195 + +0.3 97,202 - -0.6 97,210 + +0.0 97,210 + -0.1 97,211 - -0.5 97,296 + GFF3213 0.16 -0.2 97,501 + GFF3213 0.64 -0.4 97,502 - GFF3213 0.64 +0.2 97,511 + GFF3213 0.66 +0.9 97,511 + GFF3213 0.66 +0.5 97,511 + GFF3213 0.66 -0.2 97,511 + GFF3213 0.66 +0.2 97,512 - GFF3213 0.67 -0.7 97,512 - GFF3213 0.67 -0.4 98,243 + +0.0 98,243 + -0.3 98,611 + GFF3215 0.20 +2.1
Or see this region's nucleotide sequence