Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF306

Experiment: Ying_sugar7 rep C; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF306 and GFF307 overlap by 11 nucleotides GFF306 - Mobile element protein, at 327,743 to 328,534 GFF306 GFF307 - Mobile element protein, at 328,524 to 330,059 GFF307 Position (kb) 327 328 329Strain fitness (log2 ratio) -2 -1 0 1 2at 326.757 kb on + strandat 326.757 kb on + strandat 326.757 kb on + strandat 326.757 kb on + strandat 326.795 kb on + strandat 326.802 kb on + strandat 326.810 kb on - strandat 326.850 kb on + strandat 326.864 kb on + strandat 326.866 kb on + strandat 326.866 kb on + strandat 326.956 kb on + strandat 326.957 kb on - strandat 326.958 kb on + strandat 327.036 kb on - strandat 327.215 kb on + strandat 327.216 kb on - strandat 327.216 kb on - strandat 327.367 kb on + strandat 327.367 kb on + strandat 327.368 kb on - strandat 327.368 kb on - strandat 327.368 kb on - strandat 327.615 kb on + strandat 327.615 kb on + strandat 327.616 kb on - strandat 327.616 kb on - strandat 327.616 kb on - strandat 327.616 kb on - strandat 327.665 kb on + strandat 327.665 kb on + strandat 327.665 kb on + strandat 327.665 kb on + strandat 327.665 kb on + strandat 327.665 kb on + strandat 327.665 kb on + strandat 327.665 kb on + strandat 327.665 kb on + strandat 327.665 kb on + strandat 327.666 kb on - strandat 327.666 kb on - strandat 327.666 kb on - strandat 327.712 kb on - strandat 327.712 kb on - strandat 327.755 kb on + strandat 327.755 kb on + strandat 327.755 kb on + strandat 327.756 kb on - strandat 327.756 kb on - strandat 327.799 kb on + strandat 327.800 kb on - strandat 327.800 kb on - strandat 327.800 kb on - strandat 327.800 kb on - strandat 327.813 kb on + strandat 327.813 kb on + strandat 327.814 kb on - strandat 327.814 kb on - strandat 327.814 kb on - strandat 327.814 kb on - strandat 327.839 kb on - strand, within GFF306at 327.954 kb on + strand, within GFF306at 328.012 kb on - strand, within GFF306at 328.012 kb on - strand, within GFF306at 328.095 kb on + strand, within GFF306at 328.227 kb on + strand, within GFF306at 328.228 kb on - strand, within GFF306at 328.241 kb on + strand, within GFF306at 328.350 kb on + strand, within GFF306at 328.350 kb on + strand, within GFF306at 328.351 kb on - strand, within GFF306at 328.576 kb on + strandat 328.663 kb on - strandat 328.674 kb on + strandat 328.675 kb on - strandat 328.675 kb on - strandat 328.675 kb on - strandat 328.675 kb on - strandat 328.675 kb on - strandat 328.675 kb on - strandat 328.675 kb on - strandat 328.675 kb on - strandat 328.683 kb on + strand, within GFF307at 328.683 kb on + strand, within GFF307at 328.684 kb on - strand, within GFF307at 328.684 kb on - strand, within GFF307at 328.684 kb on - strand, within GFF307at 328.684 kb on - strand, within GFF307at 328.713 kb on + strand, within GFF307at 328.713 kb on + strand, within GFF307at 328.713 kb on + strand, within GFF307at 328.832 kb on + strand, within GFF307at 328.833 kb on - strand, within GFF307at 328.833 kb on - strand, within GFF307at 328.845 kb on + strand, within GFF307at 328.846 kb on - strand, within GFF307at 328.846 kb on - strand, within GFF307at 328.846 kb on - strand, within GFF307at 328.846 kb on - strand, within GFF307at 328.846 kb on - strand, within GFF307at 328.906 kb on + strand, within GFF307at 328.907 kb on - strand, within GFF307at 328.921 kb on + strand, within GFF307at 328.922 kb on - strand, within GFF307at 329.017 kb on + strand, within GFF307at 329.017 kb on + strand, within GFF307at 329.065 kb on + strand, within GFF307at 329.066 kb on - strand, within GFF307at 329.159 kb on - strand, within GFF307at 329.159 kb on - strand, within GFF307at 329.386 kb on + strand, within GFF307at 329.386 kb on + strand, within GFF307at 329.386 kb on + strand, within GFF307at 329.386 kb on + strand, within GFF307at 329.386 kb on + strand, within GFF307at 329.387 kb on - strand, within GFF307at 329.387 kb on - strand, within GFF307at 329.387 kb on - strand, within GFF307at 329.406 kb on - strand, within GFF307at 329.406 kb on - strand, within GFF307at 329.473 kb on + strand, within GFF307at 329.473 kb on + strand, within GFF307at 329.473 kb on + strand, within GFF307at 329.473 kb on + strand, within GFF307at 329.474 kb on - strand, within GFF307at 329.474 kb on - strand, within GFF307

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3
remove
326,757 + -1.8
326,757 + +0.1
326,757 + +0.5
326,757 + -1.1
326,795 + -0.1
326,802 + +0.2
326,810 - +0.1
326,850 + -0.2
326,864 + -0.5
326,866 + +0.1
326,866 + +0.6
326,956 + -1.2
326,957 - +0.6
326,958 + +0.3
327,036 - -0.1
327,215 + +0.3
327,216 - -0.1
327,216 - -2.1
327,367 + +0.0
327,367 + -1.3
327,368 - +0.3
327,368 - +0.6
327,368 - +0.6
327,615 + -0.7
327,615 + +1.1
327,616 - -0.3
327,616 - -0.1
327,616 - +0.8
327,616 - -0.3
327,665 + -0.2
327,665 + -0.2
327,665 + -0.1
327,665 + -0.9
327,665 + +0.1
327,665 + -0.4
327,665 + +0.1
327,665 + -0.5
327,665 + -0.2
327,665 + +0.1
327,666 - +0.3
327,666 - -0.4
327,666 - +0.9
327,712 - +1.1
327,712 - +0.1
327,755 + -0.2
327,755 + +0.1
327,755 + -0.9
327,756 - +2.4
327,756 - -0.2
327,799 + -0.0
327,800 - -0.1
327,800 - +0.1
327,800 - -0.3
327,800 - +0.6
327,813 + -0.8
327,813 + +0.4
327,814 - +1.1
327,814 - -0.9
327,814 - +0.2
327,814 - +0.5
327,839 - GFF306 0.12 +0.4
327,954 + GFF306 0.27 -0.2
328,012 - GFF306 0.34 +1.1
328,012 - GFF306 0.34 -0.2
328,095 + GFF306 0.44 -0.4
328,227 + GFF306 0.61 +0.5
328,228 - GFF306 0.61 +0.3
328,241 + GFF306 0.63 -0.9
328,350 + GFF306 0.77 -1.5
328,350 + GFF306 0.77 +0.5
328,351 - GFF306 0.77 +0.8
328,576 + -0.9
328,663 - +0.0
328,674 + +0.3
328,675 - -0.4
328,675 - -0.1
328,675 - -0.5
328,675 - +0.4
328,675 - -0.6
328,675 - -0.4
328,675 - -1.3
328,675 - +0.1
328,683 + GFF307 0.10 +0.1
328,683 + GFF307 0.10 +0.7
328,684 - GFF307 0.10 +0.2
328,684 - GFF307 0.10 -0.2
328,684 - GFF307 0.10 -0.2
328,684 - GFF307 0.10 +0.3
328,713 + GFF307 0.12 +2.1
328,713 + GFF307 0.12 +0.5
328,713 + GFF307 0.12 -0.7
328,832 + GFF307 0.20 -0.5
328,833 - GFF307 0.20 -0.7
328,833 - GFF307 0.20 -0.2
328,845 + GFF307 0.21 -0.1
328,846 - GFF307 0.21 -1.1
328,846 - GFF307 0.21 -0.7
328,846 - GFF307 0.21 -0.1
328,846 - GFF307 0.21 -0.7
328,846 - GFF307 0.21 +0.8
328,906 + GFF307 0.25 +0.1
328,907 - GFF307 0.25 +0.5
328,921 + GFF307 0.26 +1.3
328,922 - GFF307 0.26 +0.0
329,017 + GFF307 0.32 +0.6
329,017 + GFF307 0.32 -0.2
329,065 + GFF307 0.35 +0.2
329,066 - GFF307 0.35 +0.7
329,159 - GFF307 0.41 +0.6
329,159 - GFF307 0.41 +1.3
329,386 + GFF307 0.56 +0.5
329,386 + GFF307 0.56 -0.1
329,386 + GFF307 0.56 -0.4
329,386 + GFF307 0.56 -1.3
329,386 + GFF307 0.56 +0.1
329,387 - GFF307 0.56 +1.1
329,387 - GFF307 0.56 -0.6
329,387 - GFF307 0.56 -0.4
329,406 - GFF307 0.57 -0.7
329,406 - GFF307 0.57 +0.1
329,473 + GFF307 0.62 -0.7
329,473 + GFF307 0.62 +0.5
329,473 + GFF307 0.62 +0.1
329,473 + GFF307 0.62 +1.6
329,474 - GFF307 0.62 -0.4
329,474 - GFF307 0.62 +0.0

Or see this region's nucleotide sequence