Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF297 and GFF298 are separated by 24 nucleotides GFF298 and GFF299 are separated by 22 nucleotides GFF299 and GFF300 are separated by 19 nucleotides
GFF297 - Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17), at 310,241 to 311,593
GFF297
GFF298 - DedD protein, at 311,618 to 312,352
GFF298
GFF299 - Colicin V production protein, at 312,375 to 312,860
GFF299
GFF300 - Amidophosphoribosyltransferase (EC 2.4.2.14), at 312,880 to 314,385
GFF300
Position (kb) 312
313 Strain fitness (log2 ratio) -2
-1
0
1
2 at 311.544 kb on + strand at 311.544 kb on + strand at 311.545 kb on - strand at 311.599 kb on + strand at 312.215 kb on + strand, within GFF298 at 312.215 kb on + strand, within GFF298 at 312.215 kb on + strand, within GFF298 at 312.215 kb on + strand, within GFF298 at 312.216 kb on - strand, within GFF298 at 312.216 kb on - strand, within GFF298 at 312.216 kb on - strand, within GFF298 at 312.450 kb on + strand, within GFF299 at 312.450 kb on + strand, within GFF299 at 312.450 kb on + strand, within GFF299 at 312.450 kb on + strand, within GFF299 at 312.451 kb on - strand, within GFF299 at 312.451 kb on - strand, within GFF299 at 312.451 kb on - strand, within GFF299 at 312.451 kb on - strand, within GFF299 at 312.451 kb on - strand, within GFF299 at 312.849 kb on + strand at 312.850 kb on - strand at 312.850 kb on - strand at 312.850 kb on - strand at 312.850 kb on - strand at 312.851 kb on + strand at 312.851 kb on + strand at 312.851 kb on + strand at 312.851 kb on + strand at 312.851 kb on + strand at 312.852 kb on - strand at 312.852 kb on - strand at 312.852 kb on - strand at 312.852 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 311,544 + -0.6 311,544 + -0.3 311,545 - +0.3 311,599 + -0.3 312,215 + GFF298 0.81 -0.4 312,215 + GFF298 0.81 -0.4 312,215 + GFF298 0.81 -0.1 312,215 + GFF298 0.81 -0.9 312,216 - GFF298 0.81 -1.3 312,216 - GFF298 0.81 -2.2 312,216 - GFF298 0.81 +0.4 312,450 + GFF299 0.15 -0.2 312,450 + GFF299 0.15 +0.2 312,450 + GFF299 0.15 +0.0 312,450 + GFF299 0.15 +0.2 312,451 - GFF299 0.16 +0.1 312,451 - GFF299 0.16 +0.6 312,451 - GFF299 0.16 -0.2 312,451 - GFF299 0.16 +2.1 312,451 - GFF299 0.16 +0.5 312,849 + -0.4 312,850 - +0.2 312,850 - -1.3 312,850 - -0.1 312,850 - -0.3 312,851 + -1.4 312,851 + +0.1 312,851 + -0.4 312,851 + -0.1 312,851 + -0.8 312,852 - +0.5 312,852 - +1.4 312,852 - +1.8 312,852 - -0.0
Or see this region's nucleotide sequence