Experiment: Ying_sugar7 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF281 and GFF282 are separated by 4 nucleotides GFF282 and GFF283 overlap by 4 nucleotides GFF283 and GFF284 are separated by 46 nucleotides
GFF281 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 296,741 to 297,928
GFF281
GFF282 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 297,933 to 298,949
GFF282
GFF283 - Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1), at 298,946 to 299,902
GFF283
GFF284 - Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1), at 299,949 to 300,698
GFF284
Position (kb) 297
298
299 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 297.180 kb on - strand, within GFF281 at 297.180 kb on - strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.219 kb on - strand, within GFF281 at 297.219 kb on - strand, within GFF281 at 297.338 kb on + strand, within GFF281 at 297.402 kb on - strand, within GFF281 at 297.402 kb on - strand, within GFF281 at 297.422 kb on + strand, within GFF281 at 297.422 kb on + strand, within GFF281 at 297.422 kb on + strand, within GFF281 at 297.423 kb on - strand, within GFF281 at 297.473 kb on + strand, within GFF281 at 297.473 kb on + strand, within GFF281 at 297.474 kb on - strand, within GFF281 at 297.668 kb on + strand, within GFF281 at 297.668 kb on + strand, within GFF281 at 297.668 kb on + strand, within GFF281 at 297.669 kb on - strand, within GFF281 at 297.669 kb on - strand, within GFF281 at 297.669 kb on - strand, within GFF281 at 297.669 kb on - strand, within GFF281 at 297.670 kb on + strand, within GFF281 at 297.670 kb on + strand, within GFF281 at 297.671 kb on - strand, within GFF281 at 297.671 kb on - strand, within GFF281 at 297.671 kb on - strand, within GFF281 at 297.804 kb on - strand, within GFF281 at 297.882 kb on - strand at 298.164 kb on + strand, within GFF282 at 298.164 kb on + strand, within GFF282 at 298.612 kb on - strand, within GFF282 at 298.612 kb on - strand, within GFF282 at 298.785 kb on + strand, within GFF282 at 299.021 kb on + strand at 299.021 kb on + strand at 299.021 kb on + strand at 299.022 kb on - strand at 299.087 kb on + strand, within GFF283 at 299.088 kb on - strand, within GFF283 at 299.288 kb on + strand, within GFF283 at 299.288 kb on + strand, within GFF283 at 299.289 kb on - strand, within GFF283 at 299.289 kb on - strand, within GFF283 at 299.289 kb on - strand, within GFF283 at 299.291 kb on + strand, within GFF283 at 299.291 kb on + strand, within GFF283 at 299.303 kb on + strand, within GFF283 at 299.367 kb on - strand, within GFF283 at 299.367 kb on - strand, within GFF283 at 299.382 kb on - strand, within GFF283 at 299.382 kb on - strand, within GFF283 at 299.382 kb on - strand, within GFF283 at 299.537 kb on + strand, within GFF283 at 299.538 kb on - strand, within GFF283 at 299.726 kb on + strand, within GFF283 at 299.726 kb on + strand, within GFF283 at 299.727 kb on - strand, within GFF283 at 299.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 3 remove 297,180 - GFF281 0.37 -1.3 297,180 - GFF281 0.37 +1.1 297,218 + GFF281 0.40 +0.8 297,218 + GFF281 0.40 -0.7 297,218 + GFF281 0.40 +0.1 297,218 + GFF281 0.40 -0.5 297,218 + GFF281 0.40 -0.2 297,218 + GFF281 0.40 +0.5 297,218 + GFF281 0.40 -0.5 297,218 + GFF281 0.40 +0.7 297,219 - GFF281 0.40 -0.8 297,219 - GFF281 0.40 +0.1 297,338 + GFF281 0.50 +0.0 297,402 - GFF281 0.56 -0.4 297,402 - GFF281 0.56 -0.2 297,422 + GFF281 0.57 -0.6 297,422 + GFF281 0.57 -1.5 297,422 + GFF281 0.57 -0.1 297,423 - GFF281 0.57 -0.4 297,473 + GFF281 0.62 +1.1 297,473 + GFF281 0.62 -1.4 297,474 - GFF281 0.62 -0.7 297,668 + GFF281 0.78 -0.3 297,668 + GFF281 0.78 -0.8 297,668 + GFF281 0.78 -0.4 297,669 - GFF281 0.78 +1.1 297,669 - GFF281 0.78 +2.9 297,669 - GFF281 0.78 -0.2 297,669 - GFF281 0.78 +1.5 297,670 + GFF281 0.78 +0.3 297,670 + GFF281 0.78 +0.3 297,671 - GFF281 0.78 -1.4 297,671 - GFF281 0.78 +0.1 297,671 - GFF281 0.78 -0.5 297,804 - GFF281 0.89 -0.6 297,882 - -0.3 298,164 + GFF282 0.23 +0.4 298,164 + GFF282 0.23 -0.4 298,612 - GFF282 0.67 +0.4 298,612 - GFF282 0.67 +0.0 298,785 + GFF282 0.84 +1.1 299,021 + -2.1 299,021 + +0.2 299,021 + +0.2 299,022 - -0.3 299,087 + GFF283 0.15 +0.8 299,088 - GFF283 0.15 +0.3 299,288 + GFF283 0.36 -0.5 299,288 + GFF283 0.36 -0.8 299,289 - GFF283 0.36 -0.2 299,289 - GFF283 0.36 +0.3 299,289 - GFF283 0.36 +0.2 299,291 + GFF283 0.36 -0.5 299,291 + GFF283 0.36 -0.9 299,303 + GFF283 0.37 -1.4 299,367 - GFF283 0.44 +0.3 299,367 - GFF283 0.44 +0.2 299,382 - GFF283 0.46 -1.5 299,382 - GFF283 0.46 +1.6 299,382 - GFF283 0.46 +0.3 299,537 + GFF283 0.62 +0.5 299,538 - GFF283 0.62 -1.5 299,726 + GFF283 0.82 +0.4 299,726 + GFF283 0.82 -0.7 299,727 - GFF283 0.82 -0.6 299,858 + +0.5
Or see this region's nucleotide sequence